RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 ZIC1Q15915 447 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 DEFB110Q30KQ9 67 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 TMTC4Q5T4D3 741 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 ARMC6Q6NXE6 501 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 RANBP10Q6VN20 620 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 CDHR3Q6ZTQ4 885 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 PHC3Q8NDX5 983 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 OR52E1Q8NGJ3 308 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 OR8K5Q8NH50 307 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 CPT1BQ92523 772 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 P3H4Q92791 437 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 INPP5DQ92835 1189 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 TRAPPC9Q96Q05 1148 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 FSD1LQ9BXM9 530 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 PITPNM3Q9BZ71 974 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 COG4Q9H9E3 785 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 FAM60AQ9NP50 221 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 C1GALT1Q9NS00 363 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15□□□□□ -0.01
CLSTN3-213ENST00000541953 ERRFI1Q9UJM3 462 aaPredicted RBP15□□□□□ -0.01
CLSTN3-213ENST00000541953 ZNF451Q9Y4E5 1061 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 ALG6Q9Y672 507 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 PSTPIP1O43586 416 aa14.99□□□□□ -0.01
CLSTN3-213ENST00000541953 KLF7O75840 302 aaPredicted RBP14.99□□□□□ -0.01
CLSTN3-213ENST00000541953 KLK3P07288 261 aaPredicted RBP14.99□□□□□ -0.01
CLSTN3-213ENST00000541953 CBSLP0DN79 551 aa14.99□□□□□ -0.01
CLSTN3-213ENST00000541953 CBSP35520 551 aa14.99□□□□□ -0.01
CLSTN3-213ENST00000541953 SPARCL1Q14515 664 aa14.99□□□□□ -0.01
CLSTN3-213ENST00000541953 GSE1Q14687 1217 aa14.99□□□□□ -0.01
CLSTN3-213ENST00000541953 TAF1AQ15573 450 aaPredicted RBP14.99□□□□□ -0.01
CLSTN3-213ENST00000541953 ODF2Q5BJF6 829 aa14.99□□□□□ -0.01
CLSTN3-213ENST00000541953 TFDP3Q5H9I0 405 aa14.99□□□□□ -0.01
CLSTN3-213ENST00000541953 DENND5AQ6IQ26 1287 aa14.99□□□□□ -0.01
CLSTN3-213ENST00000541953 VSTM4Q8IW00 320 aa14.99□□□□□ -0.01
CLSTN3-213ENST00000541953 ADGRF3Q8IZF5 1079 aa14.99□□□□□ -0.01
CLSTN3-213ENST00000541953 NXPE1Q8N323 547 aa14.99□□□□□ -0.01
CLSTN3-213ENST00000541953 ACVR1CQ8NER5 493 aa14.99□□□□□ -0.01
CLSTN3-213ENST00000541953 HM13Q8TCT9 377 aa14.99□□□□□ -0.01
CLSTN3-213ENST00000541953 ZFPM2Q8WW38 1151 aa14.99□□□□□ -0.01
CLSTN3-213ENST00000541953 LCN9Q8WX39 176 aa14.99□□□□□ -0.01
CLSTN3-213ENST00000541953 RANBP9Q96S59 729 aa14.99□□□□□ -0.01
CLSTN3-213ENST00000541953 HGH1Q9BTY7 390 aa14.99□□□□□ -0.01
CLSTN3-213ENST00000541953 SRMSQ9H3Y6 488 aa14.99□□□□□ -0.01
CLSTN3-213ENST00000541953 ZBTB20Q9HC78 741 aaPredicted RBP14.99□□□□□ -0.01
CLSTN3-213ENST00000541953 CCDC66A2RUB6 948 aa14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 ZNF749O43361 778 aa14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 TPBGLP0DKB5 382 aa14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 CYP2A7P20853 494 aa14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 OTX2P32243 289 aa14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 GABRA4P48169 554 aa14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 PRKG2Q13237 762 aa14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 NR6A1Q15406 480 aa14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 PLEKHN1Q494U1 663 aaPredicted RBP14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 MRGPREQ86SM8 312 aa14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 CCDC50Q8IVM0 306 aa14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 KATNAL2Q8IYT4 538 aa14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 CARFQ8N187 725 aa14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 GLIS1Q8NBF1 620 aa14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 PRR7Q8TB68 274 aa14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 PNPLA2Q96AD5 504 aa14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 SNRNP40Q96DI7 357 aaKnown RBP14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 CCDC42Q96M95 316 aa14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 FERD3LQ96RJ6 166 aa14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 VAT1Q99536 393 aa14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 SMAD5Q99717 465 aaKnown RBP14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 ASF1BQ9NVP2 202 aa14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 GPR83Q9NYM4 423 aa14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 MAP10Q9P2G4 905 aa14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 CRLS1Q9UJA2 301 aa14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 ICKQ9UPZ9 632 aa14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 NTNG1Q9Y2I2 539 aa14.98□□□□□ -0.01
CLSTN3-213ENST00000541953 NUP210LQ5VU65 1888 aa14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 PCM1Q15154 2024 aa14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 CROCCQ5TZA2 2017 aa14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 IGLV3-16A0A075B6K0 115 aa14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 LDB2O43679 373 aa14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 DPM1O60762 260 aa14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 NDUFS1P28331 727 aa14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 TNNT3P45378 269 aaPredicted RBP14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 GEMP55040 296 aa14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 OTUD4Q01804 1114 aaKnown RBP14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 PRKAA1Q13131 559 aa14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 SLC9A5Q14940 896 aa14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 C1orf189Q5VU69 101 aa14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 AADACL2Q6P093 401 aa14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 NAPRTQ6XQN6 538 aa14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 BBS12Q6ZW61 710 aa14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 BZW1Q7L1Q6 419 aaKnown RBP14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 CLDN19Q8N6F1 224 aa14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 FLVCR1-AS1Q8TAF5 88 aa14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 RBM41Q96IZ5 413 aaKnown RBP14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 DNAJC1Q96KC8 554 aaKnown RBP14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 SPRTNQ9H040 489 aaPredicted RBP14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 FANCEQ9HB96 536 aa14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 SLAMF7Q9NQ25 335 aa14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 SPHK1Q9NYA1 384 aa14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 ACTR10Q9NZ32 417 aa14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 TRHDEQ9UKU6 1024 aa14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 PRSS21Q9Y6M0 314 aa14.97□□□□□ -0.01
CLSTN3-213ENST00000541953 COLEC10Q9Y6Z7 277 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms