RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 ATP6V1G3Q96LB4 118 aa9.14□□□□□ -0.95
DDX55-208ENST00000541259 GPR78Q96P69 363 aa9.14□□□□□ -0.95
DDX55-208ENST00000541259 PRRX2Q99811 253 aa9.14□□□□□ -0.95
DDX55-208ENST00000541259 LRRC61Q9BV99 259 aa9.14□□□□□ -0.95
DDX55-208ENST00000541259 WWP1Q9H0M0 922 aa9.14□□□□□ -0.95
DDX55-208ENST00000541259 OR52A5Q9H2C5 316 aa9.14□□□□□ -0.95
DDX55-208ENST00000541259 OSGEPL1Q9H4B0 414 aa9.14□□□□□ -0.95
DDX55-208ENST00000541259 IL21RQ9HBE5 538 aa9.14□□□□□ -0.95
DDX55-208ENST00000541259 SYTL2Q9HCH5 934 aa9.14□□□□□ -0.95
DDX55-208ENST00000541259 PRDM8Q9NQV8 689 aa9.14□□□□□ -0.95
DDX55-208ENST00000541259 UCKL1Q9NWZ5 548 aa9.14□□□□□ -0.95
DDX55-208ENST00000541259 TRNAU1APQ9NX07 287 aaKnown RBP9.14□□□□□ -0.95
DDX55-208ENST00000541259 SCHIP1Q9P0W5 487 aaPredicted RBP9.14□□□□□ -0.95
DDX55-208ENST00000541259 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.14□□□□□ -0.95
DDX55-208ENST00000541259 KLHL42Q9P2K6 505 aa9.14□□□□□ -0.95
DDX55-208ENST00000541259 APOBEC3BQ9UH17 382 aaKnown RBP9.14□□□□□ -0.95
DDX55-208ENST00000541259 RAB23Q9ULC3 237 aa9.14□□□□□ -0.95
DDX55-208ENST00000541259 SLC6A14Q9UN76 642 aa9.14□□□□□ -0.95
DDX55-208ENST00000541259 SNRNP200O75643 2136 aaKnown RBP9.14□□□□□ -0.95
DDX55-208ENST00000541259 OTOGLQ3ZCN5 2332 aa9.14□□□□□ -0.95
DDX55-208ENST00000541259 ASCC3Q8N3C0 2202 aaKnown RBP9.13□□□□□ -0.95
DDX55-208ENST00000541259 TRBV23OR9-2A0A075B6M9 112 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 NPEPPSL1A6NEC2 478 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 COPEO14579 308 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 KCNJ13O60928 360 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 KLHL2O95198 593 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 LTA4HP09960 611 aaKnown RBP9.13□□□□□ -0.95
DDX55-208ENST00000541259 BRAFP15056 766 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 DGKAP23743 735 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 HOXD12P35452 270 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 ACTR1BP42025 376 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 GLRBP48167 497 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 KCNC1P48547 511 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 BLKP51451 505 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 CLCNKAP51800 687 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 ACTR1AP61163 376 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 IL9RQ01113 521 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 MPP2Q14168 576 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 CLCA4Q14CN2 919 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 OR4D1Q15615 310 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 ZNF423Q2M1K9 1284 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 HLA-BQ31612 363 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 TTLL9Q3SXZ7 439 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 LAIR1Q6GTX8 287 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 SLC23A3Q6PIS1 610 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 TAF8Q7Z7C8 310 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 TBC1D1Q86TI0 1168 aaPredicted RBP9.13□□□□□ -0.95
DDX55-208ENST00000541259 SLC22A15Q8IZD6 547 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 NKAPQ8N5F7 415 aaKnown RBP9.13□□□□□ -0.95
DDX55-208ENST00000541259 GOLGA6L1Q8N7Z2 621 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 PHC3Q8NDX5 983 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 CFAP61Q8NHU2 1237 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 GLMNQ92990 594 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 TMEM159Q96B96 161 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 PTERQ96BW5 349 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 CABS1Q96KC9 395 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 RMDN2Q96LZ7 410 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 SMC6Q96SB8 1091 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 INSM2Q96T92 566 aaPredicted RBP9.13□□□□□ -0.95
DDX55-208ENST00000541259 ELF4Q99607 663 aaPredicted RBP9.13□□□□□ -0.95
DDX55-208ENST00000541259 ZDHHC5Q9C0B5 715 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 GAREM1Q9H706 876 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 ERVMER34-1Q9H9K5 563 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 TMEM216Q9P0N5 145 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 TAAR2Q9P1P5 351 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 TBC1D29Q9UFV1 150 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 ADAMTS6Q9UKP5 1117 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 EMCNQ9ULC0 261 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 ASXL3Q9C0F0 2248 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 RP1P56715 2156 aa9.13□□□□□ -0.95
DDX55-208ENST00000541259 PRAMEF33A0A0G2JMD5 474 aa9.12□□□□□ -0.95
DDX55-208ENST00000541259 KRT87PA6NCN2 255 aa9.12□□□□□ -0.95
DDX55-208ENST00000541259 PDZK1P1A8MUH7 402 aa9.12□□□□□ -0.95
DDX55-208ENST00000541259 H3BM21 787 aa9.12□□□□□ -0.95
DDX55-208ENST00000541259 AQP9O43315 295 aa9.12□□□□□ -0.95
DDX55-208ENST00000541259 TYROBPO43914 113 aa9.12□□□□□ -0.95
DDX55-208ENST00000541259 PIAS2O75928 621 aa9.12□□□□□ -0.95
DDX55-208ENST00000541259 SBK3P0C264 359 aa9.12□□□□□ -0.95
DDX55-208ENST00000541259 FBXO45P0C2W1 286 aa9.12□□□□□ -0.95
DDX55-208ENST00000541259 MPC1LP0DKB6 136 aa9.12□□□□□ -0.95
DDX55-208ENST00000541259 CBSLP0DN79 551 aa9.12□□□□□ -0.95
DDX55-208ENST00000541259 COL6A2P12110 1019 aa9.12□□□□□ -0.95
DDX55-208ENST00000541259 VCLP18206 1134 aa9.12□□□□□ -0.95
DDX55-208ENST00000541259 TFEBP19484 476 aa9.12□□□□□ -0.95
DDX55-208ENST00000541259 IDSP22304 550 aa9.12□□□□□ -0.95
DDX55-208ENST00000541259 ACADLP28330 430 aa9.12□□□□□ -0.95
DDX55-208ENST00000541259 ATP5DP30049 168 aa9.12□□□□□ -0.95
DDX55-208ENST00000541259 CRHR1P34998 444 aa9.12□□□□□ -0.95
DDX55-208ENST00000541259 RPA3P35244 121 aaPredicted RBP9.12□□□□□ -0.95
DDX55-208ENST00000541259 CBSP35520 551 aa9.12□□□□□ -0.95
DDX55-208ENST00000541259 SOX11P35716 441 aa9.12□□□□□ -0.95
DDX55-208ENST00000541259 SLC26A3P40879 764 aa9.12□□□□□ -0.95
DDX55-208ENST00000541259 DPP6P42658 865 aa9.12□□□□□ -0.95
DDX55-208ENST00000541259 RXRGP48443 463 aa9.12□□□□□ -0.95
DDX55-208ENST00000541259 RGS4P49798 205 aa9.12□□□□□ -0.95
DDX55-208ENST00000541259 HNRNPKP61978 463 aaKnown RBP eCLIP9.12□□□□□ -0.95
DDX55-208ENST00000541259 ILF3Q12906 894 aaKnown RBP eCLIP9.12□□□□□ -0.95
DDX55-208ENST00000541259 RPA4Q13156 261 aa9.12□□□□□ -0.95
DDX55-208ENST00000541259 LRP8Q14114 963 aa9.12□□□□□ -0.95
DDX55-208ENST00000541259 TSNQ15631 228 aaKnown RBP9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms