RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 IL22RA1Q8N6P7 574 aa14.39□□□□□ -0.11
USP28-204ENST00000537642 LKAAEAR1Q8TD35 194 aa14.39□□□□□ -0.11
USP28-204ENST00000537642 LCN9Q8WX39 176 aa14.39□□□□□ -0.11
USP28-204ENST00000537642 CPT1BQ92523 772 aa14.39□□□□□ -0.11
USP28-204ENST00000537642 RNF31Q96EP0 1072 aa14.39□□□□□ -0.11
USP28-204ENST00000537642 MFSD3Q96ES6 412 aa14.39□□□□□ -0.11
USP28-204ENST00000537642 PPM1MQ96MI6 270 aa14.39□□□□□ -0.11
USP28-204ENST00000537642 CD180Q99467 661 aa14.39□□□□□ -0.11
USP28-204ENST00000537642 HGH1Q9BTY7 390 aa14.39□□□□□ -0.11
USP28-204ENST00000537642 MVB12BQ9H7P6 319 aa14.39□□□□□ -0.11
USP28-204ENST00000537642 SOX13Q9UN79 622 aa14.39□□□□□ -0.11
USP28-204ENST00000537642 PCDHGA4Q9Y5G9 962 aa14.39□□□□□ -0.11
USP28-204ENST00000537642 UBA6A0AVT1 1052 aaPredicted RBP14.38□□□□□ -0.11
USP28-204ENST00000537642 IQCF5A8MTL0 148 aa14.38□□□□□ -0.11
USP28-204ENST00000537642 BHMG1C9JSJ3 638 aaPredicted RBP14.38□□□□□ -0.11
USP28-204ENST00000537642 PHF2O75151 1096 aa14.38□□□□□ -0.11
USP28-204ENST00000537642 TMEM63AO94886 807 aa14.38□□□□□ -0.11
USP28-204ENST00000537642 FGF5P12034 268 aa14.38□□□□□ -0.11
USP28-204ENST00000537642 LIFP15018 202 aa14.38□□□□□ -0.11
USP28-204ENST00000537642 FOLR1P15328 257 aa14.38□□□□□ -0.11
USP28-204ENST00000537642 CCR7P32248 378 aa14.38□□□□□ -0.11
USP28-204ENST00000537642 PPARGP37231 505 aaPredicted RBP14.38□□□□□ -0.11
USP28-204ENST00000537642 PRKG2Q13237 762 aa14.38□□□□□ -0.11
USP28-204ENST00000537642 IL11RAQ14626 422 aa14.38□□□□□ -0.11
USP28-204ENST00000537642 AARS2Q5JTZ9 985 aaKnown RBP14.38□□□□□ -0.11
USP28-204ENST00000537642 ARMC6Q6NXE6 501 aa14.38□□□□□ -0.11
USP28-204ENST00000537642 CAND1Q86VP6 1230 aaKnown RBP14.38□□□□□ -0.11
USP28-204ENST00000537642 NLGN4XQ8N0W4 816 aa14.38□□□□□ -0.11
USP28-204ENST00000537642 MPP5Q8N3R9 675 aa14.38□□□□□ -0.11
USP28-204ENST00000537642 SIDT2Q8NBJ9 832 aaKnown RBP14.38□□□□□ -0.11
USP28-204ENST00000537642 LSM14AQ8ND56 463 aaKnown RBP14.38□□□□□ -0.11
USP28-204ENST00000537642 NLGN4YQ8NFZ3 816 aaPredicted RBP14.38□□□□□ -0.11
USP28-204ENST00000537642 OR52E1Q8NGJ3 308 aa14.38□□□□□ -0.11
USP28-204ENST00000537642 OR5AR1Q8NGP9 310 aa14.38□□□□□ -0.11
USP28-204ENST00000537642 SLC39A7Q92504 469 aa14.38□□□□□ -0.11
USP28-204ENST00000537642 ANP32BQ92688 251 aaKnown RBP14.38□□□□□ -0.11
USP28-204ENST00000537642 ELMO2Q96JJ3 720 aa14.38□□□□□ -0.11
USP28-204ENST00000537642 CARD6Q9BX69 1037 aa14.38□□□□□ -0.11
USP28-204ENST00000537642 SRMSQ9H3Y6 488 aa14.38□□□□□ -0.11
USP28-204ENST00000537642 TFB2MQ9H5Q4 396 aaKnown RBP14.38□□□□□ -0.11
USP28-204ENST00000537642 ANAPC5Q9UJX4 755 aa14.38□□□□□ -0.11
USP28-204ENST00000537642 ATRXP46100 2492 aa14.38□□□□□ -0.11
USP28-204ENST00000537642 LOC101059948A0A1B0GTJ6 334 aa14.37□□□□□ -0.11
USP28-204ENST00000537642 F8W8V4 182 aa14.37□□□□□ -0.11
USP28-204ENST00000537642 TK2O00142 265 aa14.37□□□□□ -0.11
USP28-204ENST00000537642 BTN3A3O00478 584 aa14.37□□□□□ -0.11
USP28-204ENST00000537642 BTN3A1O00481 513 aa14.37□□□□□ -0.11
USP28-204ENST00000537642 PRMT5O14744 637 aaPredicted RBP14.37□□□□□ -0.11
USP28-204ENST00000537642 EBLN1P0CF75 366 aa14.37□□□□□ -0.11
USP28-204ENST00000537642 SPTBP11277 2137 aa14.37□□□□□ -0.11
USP28-204ENST00000537642 MAP4P27816 1152 aaKnown RBP14.37□□□□□ -0.11
USP28-204ENST00000537642 FNTAP49354 379 aa14.37□□□□□ -0.11
USP28-204ENST00000537642 TTPAP49638 278 aa14.37□□□□□ -0.11
USP28-204ENST00000537642 CSE1LP55060 971 aaKnown RBP14.37□□□□□ -0.11
USP28-204ENST00000537642 SARNPP82979 210 aaKnown RBP14.37□□□□□ -0.11
USP28-204ENST00000537642 PLOD1Q02809 727 aaPredicted RBP14.37□□□□□ -0.11
USP28-204ENST00000537642 SYTL3Q4VX76 610 aa14.37□□□□□ -0.11
USP28-204ENST00000537642 TAF1BQ53T94 588 aaPredicted RBP14.37□□□□□ -0.11
USP28-204ENST00000537642 FBXO38Q6PIJ6 1188 aa14.37□□□□□ -0.11
USP28-204ENST00000537642 KMT5CQ86Y97 462 aa14.37□□□□□ -0.11
USP28-204ENST00000537642 KRT222Q8N1A0 295 aa14.37□□□□□ -0.11
USP28-204ENST00000537642 MCUQ8NE86 351 aa14.37□□□□□ -0.11
USP28-204ENST00000537642 ULBP3Q9BZM4 244 aa14.37□□□□□ -0.11
USP28-204ENST00000537642 P2RY12Q9H244 342 aa14.37□□□□□ -0.11
USP28-204ENST00000537642 XKR8Q9H6D3 395 aa14.37□□□□□ -0.11
USP28-204ENST00000537642 POMT2Q9UKY4 750 aa14.37□□□□□ -0.11
USP28-204ENST00000537642 PYCARDQ9ULZ3 195 aa14.37□□□□□ -0.11
USP28-204ENST00000537642 CDYLQ9Y232 598 aa14.37□□□□□ -0.11
USP28-204ENST00000537642 GOLGA6L10A0A0M3HER8 536 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 GSAPA4D1B5 854 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 GPC4O75487 556 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 SPAG6O75602 509 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 KIAA0754O94854 1291 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 VAPBO95292 243 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 TIAF1O95411 115 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 ZBTB11O95625 1053 aaPredicted RBP14.36□□□□□ -0.11
USP28-204ENST00000537642 PRB1P04280 392 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 MLNP12872 115 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 CYP4F2P78329 520 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 HSD11B2P80365 405 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 ABHD18Q0P651 414 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 PRKAA1Q13131 559 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 TUBB3Q13509 450 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 MAP7Q14244 749 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 AMIGO1Q86WK6 493 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 PPP1R3BQ86XI6 285 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 RASGRP3Q8IV61 690 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 VRK3Q8IV63 474 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 SLC22A15Q8IZD6 547 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 ADGRF3Q8IZF5 1079 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 UNC5BQ8IZJ1 945 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 CARFQ8N187 725 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 D2HGDHQ8N465 521 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 ZSCAN1Q8NBB4 408 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 WBP1Q96G27 269 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 TRIM56Q9BRZ2 755 aaKnown RBP14.36□□□□□ -0.11
USP28-204ENST00000537642 SLC12A9Q9BXP2 914 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 TRIT1Q9H3H1 467 aaKnown RBP14.36□□□□□ -0.11
USP28-204ENST00000537642 ICKQ9UPZ9 632 aa14.36□□□□□ -0.11
USP28-204ENST00000537642 ASF1AQ9Y294 204 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms