RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 ZMPSTE24O75844 475 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 IFNA5P01569 189 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 APOC3P02656 99 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 INHAP05111 366 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 C2P06681 752 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 ALPIP09923 528 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 TPT1P13693 172 aaKnown RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 JUPP14923 745 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 TPH1P17752 444 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 CXCR2P25025 360 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 GTF2E2P29084 291 aaKnown RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 S100A3P33764 101 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 RAB7AP51149 207 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 EEFSECP57772 596 aaKnown RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 DLK1P80370 383 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 GPSM2P81274 684 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 LAPTM4AQ15012 233 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 FXNQ16595 210 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 UBAP2Q5T6F2 1119 aaKnown RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 LRRC38Q5VT99 294 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 C16orf46Q6P387 395 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 UGT2A3Q6UWM9 527 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 HSDL2Q6YN16 418 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 NUDT18Q6ZVK8 323 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 PTCHD4Q6ZW05 846 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 FAM124AQ86V42 546 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 ZDHHC17Q8IUH5 632 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 SIAH1Q8IUQ4 282 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 LACC1Q8IV20 430 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 CCDC116Q8IYX3 515 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 ARL14Q8N4G2 192 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 PI4KAP1Q8N8J0 262 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 ATP6V0D2Q8N8Y2 350 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 C12orf29Q8N999 325 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 LRRC57Q8N9N7 239 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 ANKRD52Q8NB46 1076 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 GLB1L3Q8NCI6 653 aaPredicted RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 C7orf57Q8NEG2 295 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 OR2L5Q8NG80 312 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 BPIFB1Q8TDL5 484 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 SMAP2Q8WU79 429 aaPredicted RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 CCDC74AQ96AQ1 378 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 MYRFLQ96LU7 910 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 ZNF778Q96MU6 729 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 CAMK1GQ96NX5 476 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 GPER1Q99527 375 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 AMNQ9BXJ7 453 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 NFKBIZQ9BYH8 718 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 LRRC19Q9H756 370 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 RPF1Q9H9Y2 349 aaKnown RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 PATZ1Q9HBE1 687 aaKnown RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 TAS2R9Q9NYW1 312 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 HCN2Q9UL51 889 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 EXOSC1Q9Y3B2 195 aaKnown RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 NOP16Q9Y3C1 178 aaKnown RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 NAALAD2Q9Y3Q0 740 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 PCDHB2Q9Y5E7 798 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 N6AMT1Q9Y5N5 214 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 CNTNAP4Q9C0A0 1308 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 NPHP3-ACAD11A0A0J9YXS1 232 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 FAM196BA6NMK8 535 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 F6X3S4 739 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 F8W036 122 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 H3BN98 237 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 H3BRB1 525 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 TOR1AO14656 332 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 PPP1R2P9O14990 202 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 BET1O15155 118 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 SEC14L5O43304 696 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 CIDEAO60543 219 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 TCEA3O75764 348 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 OR6A2O95222 327 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 F9P00740 461 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 CST1P01037 141 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 PROCP04070 461 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 CDK1P06493 297 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 HCKP08631 526 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 TACSTD2P09758 323 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 NR2C1P13056 603 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 CHRM3P20309 590 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 ZNF81P51508 661 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 MECP2P51608 486 aaKnown RBP3.53□□□□□ -1.85
USP53-205ENST00000509769 CTSWP56202 376 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 DYNLT1P63172 113 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 TXNL4AP83876 142 aaKnown RBP3.53□□□□□ -1.85
USP53-205ENST00000509769 SLC25A3Q00325 362 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 LIPEQ05469 1076 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 CRYZQ08257 329 aaKnown RBP3.53□□□□□ -1.85
USP53-205ENST00000509769 ZNF235Q14590 738 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 TMEM132BQ14DG7 1078 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 ATPAF1Q5TC12 328 aaPredicted RBP3.53□□□□□ -1.85
USP53-205ENST00000509769 ZNF697Q5TEC3 545 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 ATG9BQ674R7 924 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 TIGD3Q6B0B8 471 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 C22orf42Q6IC83 251 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 PIGWQ7Z7B1 504 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 FAM35AQ86V20 835 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 ZNF410Q86VK4 478 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 LARGE2Q8N3Y3 721 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 FAM160A2Q8N612 972 aaPredicted RBP3.53□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms