RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 CR2P20023 1033 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 CD151P48509 253 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 EMP3P54852 163 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 POLR2LP62875 67 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 OCA2Q04671 838 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 DGCR6Q14129 220 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 MLF2Q15773 248 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 LEXMQ3ZCV2 418 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 TIGD2Q4W5G0 525 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 PDCD4Q53EL6 469 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 C9orf64Q5T6V5 341 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 RSBN1Q5VWQ0 802 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 SLC41A1Q8IVJ1 513 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 CCDC103Q8IW40 242 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 GJD3Q8N144 294 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 LRTOMTQ8WZ04 291 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 ARRDC3Q96B67 414 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 RCN3Q96D15 328 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 NPAS2Q99743 824 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 ARPC5LQ9BPX5 153 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 CXorf21Q9HAI6 301 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 KCNK13Q9HB14 408 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 TRPV5Q9NQA5 729 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 ZNF358Q9NW07 568 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 RABGEF1Q9UJ41 708 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 CROTQ9UKG9 612 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 E5RI56 91 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 TYROBPO43914 113 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 POU2F2P09086 479 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 COL9A1P20849 921 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 CD247P20963 164 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 PPARGP37231 505 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 THOP1P52888 689 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 EIF4HQ15056 248 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 CST6Q15828 149 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 PLA2G4EQ3MJ16 856 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 PPM1JQ5JR12 505 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 LGSNQ5TDP6 509 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 CNSTQ6PJW8 725 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 CCDC81Q6ZN84 652 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 DTX3Q8N9I9 347 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 BRSK1Q8TDC3 778 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 CXorf40AQ8TE69 158 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 LENG8Q96PV6 779 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 C20orf27Q9GZN8 174 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 SUN2Q9UH99 717 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 A0A0J9YYE9 177 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 ZSCAN5BA6NJL1 495 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 OR2AG2A6NM03 316 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 ZNF839A8K0R7 811 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 F8W8V4 182 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 OR1I1O60431 355 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 MAGEC1O60732 1142 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 BCL10O95999 233 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 TRBC1P01850 177 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 GCAP28676 217 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 SLC1A2P43004 574 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 COPZ1P61923 177 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 NSUN2Q08J23 767 aaKnown RBP eCLIP8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 COL9A2Q14055 689 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 CHRNA6Q15825 494 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 ZNF805Q5CZA5 627 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 CRTC1Q6UUV9 634 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 RALGPS2Q86X27 583 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 ZC3H7AQ8IWR0 971 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 SCAIQ8N9R8 606 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 CMTM5Q96DZ9 223 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 CDKN2AIPNLQ96HQ2 116 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 CD320Q9NPF0 282 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 EIF2B3Q9NR50 452 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 CATSPERZQ9NTU4 200 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 FBXO5Q9UKT4 447 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 BOLA1Q9Y3E2 137 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 IGLON5A6NGN9 336 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 SOBPA7XYQ1 873 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 UPK3BL1B0FP48 263 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 UPK3BL2E5RIL1 263 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 TRAFD1O14545 582 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 SRP72O76094 671 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 ADRA1AP35348 466 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 MAPK8P45983 427 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 NEK2P51955 445 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 PLK1P53350 603 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 KCNJ8Q15842 424 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 PPP1R3AQ16821 1122 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 SETMARQ53H47 684 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 FBXO48Q5FWF7 155 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 PTRHD1Q6GMV3 140 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 PSAPL1Q6NUJ1 521 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 VASH1Q7L8A9 365 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 PIWIL3Q7Z3Z3 882 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 SLC15A4Q8N697 577 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 OR4L1Q8NH43 312 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 PSMA8Q8TAA3 256 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 FRS2Q8WU20 508 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 PIH1D2Q8WWB5 315 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 ALKBH8Q96BT7 664 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 PPP1R16AQ96I34 528 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 VPS50Q96JG6 964 aa8.53□□□□□ -1.04
LIMCH1-209ENST00000509277 PPP1R2P1Q96PQ5 205 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms