RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 IZUMO3Q5VZ72 239 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 LCN10Q6JVE6 187 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 CLEC18BQ6UXF7 455 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 ZNF517Q6ZMY9 492 aaPredicted RBP11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 SERPINA9Q86WD7 417 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 ATCAYQ86WG3 371 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 KLHDC8BQ8IXV7 354 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 DSELQ8IZU8 1212 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 ENDOVQ8N8Q3 282 aaKnown RBP11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 CLEC18CQ8NCF0 446 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 OR52E1Q8NGJ3 308 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 OR1L3Q8NH93 324 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 CPT1BQ92523 772 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 LRRC45Q96CN5 670 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 CLIP3Q96DZ5 547 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 CALR3Q96L12 384 aaKnown RBP11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 LRFN5Q96NI6 719 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 C19orf43Q9BQ61 176 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 HGH1Q9BTY7 390 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 KLHL25Q9H0H3 589 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 OR52A5Q9H2C5 316 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 VPS37BQ9H9H4 285 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 ARNT2Q9HBZ2 717 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 ACSS2Q9NR19 701 aa11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 REXO2Q9Y3B8 237 aaKnown RBP11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 EPN1Q9Y6I3 576 aaPredicted RBP11.21□□□□□ -0.61
HMGCS1-204ENST00000507293 SNRNP200O75643 2136 aaKnown RBP11.21□□□□□ -0.62
HMGCS1-204ENST00000507293 PCSK5Q92824 1860 aa11.21□□□□□ -0.62
HMGCS1-204ENST00000507293 CCDC88CQ9P219 2028 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 TRBV5-4A0A0C4DH59 114 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 GRID2IPA4D2P6 1211 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 BTNL10A8MVZ5 291 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 H7C0S8 307 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 MEN1O00255 615 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 IPO7O95373 1038 aaKnown RBP11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 METTL18O95568 372 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 PVRP15151 417 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 ST6GAL1P15907 406 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 TPH1P17752 444 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 PDHA2P29803 388 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 PRDX3P30048 256 aaKnown RBP11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 RORAP35398 523 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 PTGIRP43119 386 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 PREPP48147 710 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 CD97P48960 835 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 PGDP52209 483 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 ZNF789Q5FWF6 425 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 KCTD11Q693B1 232 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 RAD9BQ6WBX8 426 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 ARHGEF18Q6ZSZ5 1173 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 TAS2R42Q7RTR8 314 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 FAM26EQ8N5C1 309 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 LRRC57Q8N9N7 239 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 PHC3Q8NDX5 983 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 ACRBPQ8NEB7 543 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 ADAMTS17Q8TE56 1095 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 PANX2Q96RD6 677 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 SLC25A23Q9BV35 468 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 PITPNM3Q9BZ71 974 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 LACRTQ9GZZ8 138 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 ING2Q9H160 280 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 XKR8Q9H6D3 395 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 MVB12BQ9H7P6 319 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 PCMTD2Q9NV79 361 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 NLE1Q9NVX2 485 aaPredicted RBP11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 SNX7Q9UNH6 387 aa11.2□□□□□ -0.62
HMGCS1-204ENST00000507293 NUP210LQ5VU65 1888 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 CCDC78A2IDD5 438 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 C2orf74A8MZ97 194 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 ZNF189O75820 626 aaPredicted RBP11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 PTMAP06454 111 aaKnown RBP11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 RAB40ALP0C0E4 278 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 CYP2A7P20853 494 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 CD151P48509 253 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 CCL11P51671 97 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 CACNG1Q06432 222 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 RPA4Q13156 261 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 PRKG2Q13237 762 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 BOP1Q14137 746 aaKnown RBP11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 POU6F1Q14863 301 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 DBN1Q16643 649 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 PARP6Q2NL67 630 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 PTCHD3Q3KNS1 767 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 NADK2Q4G0N4 442 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 FAM69BQ5VUD6 431 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 ZNF449Q6P9G9 518 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 FAM198BQ6UWH4 519 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 AMIGO1Q86WK6 493 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 TMTC1Q8IUR5 882 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 SYTL1Q8IYJ3 562 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 CLDN19Q8N6F1 224 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 FAM71DQ8N9W8 422 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 STYXQ8WUJ0 223 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 TFGQ92734 400 aaPredicted RBP11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 CDKN2AIPNLQ96HQ2 116 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 TRAPPC9Q96Q05 1148 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 NLNQ9BYT8 704 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 TFB2MQ9H5Q4 396 aaKnown RBP11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 LRRC40Q9H9A6 602 aa11.19□□□□□ -0.62
HMGCS1-204ENST00000507293 ACTR5Q9H9F9 607 aaPredicted RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms