RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, human

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-208	ENST00000504489	NAPRT	Q6XQN6	538 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	PDZD3	Q86UT5	571 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	ZC3HC1	Q86WB0	502 aa	Known RBP	11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	TRIM48	Q8IWZ4	208 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	RBM12B	Q8IXT5	1001 aa	Known RBP	11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	ZFPM2	Q8WW38	1151 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	CCDC74A	Q96AQ1	378 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	CXorf40B	Q96DE9	158 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	C12orf66	Q96MD2	445 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	LDHAL6B	Q9BYZ2	381 aa	Predicted RBP	11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	RHOJ	Q9H4E5	214 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	ACSS3	Q9H6R3	686 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	UCK1	Q9HA47	277 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	TAS2R13	Q9NYV9	303 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	TXNDC16	Q9P2K2	825 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	GALP	Q9UBC7	116 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	HEBP2	Q9Y5Z4	205 aa		11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	MDC1	Q14676	2089 aa	Known RBP	11.63	□□□□□ -0.55
PDLIM5-208	ENST00000504489	SPEG	Q15772	3267 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	ZW10	O43264	779 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	VPS26A	O75436	327 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	PIAS1	O75925	651 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	ACSL3	O95573	720 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	MCM3	P25205	808 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	NDUFS1	P28331	727 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	GP5	P40197	560 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	ABCG1	P45844	678 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	VSNL1	P62760	191 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	TIAL1	Q01085	375 aa	Known RBP eCLIP	11.62	□□□□□ -0.55	4e-8	■■■■□ 22.5
PDLIM5-208	ENST00000504489	TTLL9	Q3SXZ7	439 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	RBM20	Q5T481	1227 aa	Known RBP	11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	UBAP2	Q5T6F2	1119 aa	Known RBP	11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	GRTP1	Q5TC63	336 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	FAM45BP	Q6NSW5	357 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	TMEM26	Q6ZUK4	368 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	VRK3	Q8IV63	474 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	CTAGE3P	Q8IX95	158 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	GSPT2	Q8IYD1	628 aa	Known RBP	11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	ZBTB2	Q8N680	514 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	PPM1N	Q8N819	430 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	WDR48	Q8TAF3	677 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	FAM45A	Q8TCE6	357 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	TFG	Q92734	400 aa	Predicted RBP	11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	INPP5D	Q92835	1189 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	VPS39	Q96JC1	886 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	CYTH2	Q99418	400 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	NDN	Q99608	321 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	GPR21	Q99679	349 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	CCDC3	Q9BQI4	270 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	MVB12B	Q9H7P6	319 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	SLC40A1	Q9NP59	571 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	VWA7	Q9Y334	891 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	COLEC10	Q9Y6Z7	277 aa		11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489		V9GYY5	206 aa	Predicted RBP	11.62	□□□□□ -0.55
PDLIM5-208	ENST00000504489	ADAMTS20	P59510	1910 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489		A0A087WUV0	522 aa	Predicted RBP	11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	LILRA5	A6NI73	299 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	EIF3F	O00303	357 aa	Predicted RBP	11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	RIPK2	O43353	540 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	B4GAT1	O43505	415 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	OPA1	O60313	960 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	TUBB	P07437	444 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	ABHD2	P08910	425 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	CBSL	P0DN79	551 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	FDXR	P22570	491 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	CBS	P35520	551 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	EPHA4	P54764	986 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	CDKN2D	P55273	166 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	SQSTM1	Q13501	440 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	HECTD2	Q5U5R9	776 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	NEK10	Q6ZWH5	1172 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	DGLUCY	Q7Z3D6	616 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	SPRED1	Q7Z699	444 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	TBC1D21	Q8IYX1	336 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	GPATCH11	Q8N954	259 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	GIMAP7	Q8NHV1	300 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	CD200R1	Q8TD46	325 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	ADAMTS14	Q8WXS8	1223 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	FAM136A	Q96C01	138 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	SLC38A3	Q99624	504 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	RBBP8	Q99708	897 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	SLC30A3	Q99726	388 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	LRRN3	Q9H3W5	708 aa		11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	IMP3	Q9NV31	184 aa	Known RBP	11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	TRMT6	Q9UJA5	497 aa	Known RBP	11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	CFAP20	Q9Y6A4	193 aa	Known RBP	11.61	□□□□□ -0.55
PDLIM5-208	ENST00000504489	IGHV1OR21-1	A0A087WYE8	117 aa		11.6	□□□□□ -0.55
PDLIM5-208	ENST00000504489	PRAMEF33	A0A0G2JMD5	474 aa		11.6	□□□□□ -0.55
PDLIM5-208	ENST00000504489	FAM95C	A0A1B0GW59	222 aa		11.6	□□□□□ -0.55
PDLIM5-208	ENST00000504489	NTN3	O00634	580 aa	Predicted RBP	11.6	□□□□□ -0.55
PDLIM5-208	ENST00000504489	MATN4	O95460	622 aa		11.6	□□□□□ -0.55
PDLIM5-208	ENST00000504489	ENO3	P13929	434 aa	Predicted RBP	11.6	□□□□□ -0.55
PDLIM5-208	ENST00000504489	ALDH4A1	P30038	563 aa		11.6	□□□□□ -0.55
PDLIM5-208	ENST00000504489	SPR	P35270	261 aa	Predicted RBP	11.6	□□□□□ -0.55
PDLIM5-208	ENST00000504489	LIMK2	P53671	638 aa		11.6	□□□□□ -0.55
PDLIM5-208	ENST00000504489	OR1D5	P58170	312 aa		11.6	□□□□□ -0.55
PDLIM5-208	ENST00000504489	CCL7	P80098	99 aa		11.6	□□□□□ -0.55
PDLIM5-208	ENST00000504489	GPLD1	P80108	840 aa		11.6	□□□□□ -0.55
PDLIM5-208	ENST00000504489	INSM1	Q01101	510 aa	Predicted RBP	11.6	□□□□□ -0.55

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