RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 COG8Q96MW5 612 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 DCUN1D5Q9BTE7 237 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 HTATIP2Q9BUP3 242 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 NAA50Q9GZZ1 169 aaKnown RBP15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 CWH43Q9H720 699 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ELOVL2Q9NXB9 296 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 IFT80Q9P2H3 777 aaPredicted RBP15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 MAGED1Q9Y5V3 778 aaPredicted RBP15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 A0A1B0GVM2 712 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 TULP3O75386 442 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 KATNA1O75449 491 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ANXA6P08133 673 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 JAK1P23458 1154 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 SHMT2P34897 504 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ARSFP54793 590 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 WDR5P61964 334 aaKnown RBP15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 CACNG1Q06432 222 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ZIK1Q3SY52 487 aaPredicted RBP15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 GPR107Q5VW38 600 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 LEMD2Q8NC56 503 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ZNF420Q8TAQ5 688 aaPredicted RBP15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 C2orf15Q8WU43 125 aaKnown RBP15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 BCL7CQ8WUZ0 217 aaPredicted RBP15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 GFM2Q969S9 779 aaKnown RBP15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 TMBIM1Q969X1 311 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 MUS81Q96NY9 551 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 NACA2Q9H009 215 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 PKD2L2Q9NZM6 624 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ZNHIT2Q9UHR6 403 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ZNF711Q9Y462 761 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 TNPO3Q9Y5L0 923 aaKnown RBP15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 IFRD1O00458 451 aaPredicted RBP15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 PRMT5O14744 637 aaPredicted RBP15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 DFNA5O60443 496 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 RAP2AP10114 183 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 MYOGP15173 224 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ELK4P28324 431 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 TTKP33981 857 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ARL1P40616 181 aaPredicted RBP15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ALDH3A2P51648 485 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 PLIN5Q00G26 463 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 TMEM26Q6ZUK4 368 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 FRA10AC1Q70Z53 315 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ITIH5Q86UX2 942 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 STK40Q8N2I9 435 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 FAM86B1Q8N7N1 296 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 OR8J3Q8NGG0 315 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 LKAAEAR1Q8TD35 194 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 PLD4Q96BZ4 506 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 IPPKQ9H8X2 491 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 SMPD4Q9NXE4 827 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 VAPAQ9P0L0 249 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 LRFN2Q9ULH4 789 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 PCDHB7Q9Y5E2 793 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 FFAR2O15552 330 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ALPLP05186 524 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 DAG1Q14118 895 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 CBX2Q14781 532 aaPredicted RBP15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 HECTD3Q5T447 861 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 CNKSR3Q6P9H4 555 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ADAMTSL2Q86TH1 951 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ABI1Q8IZP0 508 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ITFG1Q8TB96 612 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 HSPBAP1Q96EW2 488 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ARPC5LQ9BPX5 153 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 NSUN3Q9H649 340 aaKnown RBP15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 PLGRKTQ9HBL7 147 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 EVLQ9UI08 416 aaPredicted RBP15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ZMYM5Q9UJ78 669 aa15.79■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 TBKBP1A7MCY6 615 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 H7C4K7 107 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 GAPDHSO14556 408 aaPredicted RBP15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 B4GAT1O43505 415 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 FOXD2O60548 495 aaPredicted RBP15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 DEAF1O75398 565 aaPredicted RBP15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 CPNE6O95741 557 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ALBP02768 609 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 PCNAP12004 261 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 HSPA7P48741 367 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 NKG7Q16617 165 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 TMEM240Q5SV17 173 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ADGRF1Q5T601 910 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 CCDC115Q96NT0 180 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 BOCQ9BWV1 1114 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 RNF38Q9H0F5 515 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 IL23AQ9NPF7 189 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 PCDHB9Q9Y5E1 797 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 PCDHB1Q9Y5F3 818 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 GLUD1P00367 558 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 OTCP00480 354 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ALPIP09923 528 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 IRF1P10914 325 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 BMP1P13497 986 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 HMGA1P17096 107 aaKnown RBP15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 CTPS1P17812 591 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 CD247P20963 164 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 MZF1P28698 734 aaPredicted RBP15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 HMGCLP35914 325 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 SLC44A4Q53GD3 710 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ANKS3Q6ZW76 656 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms