RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 ALX3O95076 343 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 MED26O95402 600 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 FADS2O95864 444 aaKnown RBP9.51□□□□□ -0.89
SYNE1-230ENST00000495090 PGK2P07205 417 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 ATXN1LP0C7T5 689 aaKnown RBP9.51□□□□□ -0.89
SYNE1-230ENST00000495090 TRAPPC2P0DI81 140 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 TRAPPC2BP0DI82 140 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 G6PDP11413 515 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 SPNP16150 400 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 CD9P21926 228 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 AKAP5P24588 427 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 AKT1P31749 480 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 CCR1P32246 355 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 S100A5P33763 92 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 CD86P42081 329 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 CLK1P49759 484 aaKnown RBP9.51□□□□□ -0.89
SYNE1-230ENST00000495090 CLK3P49761 638 aaKnown RBP9.51□□□□□ -0.89
SYNE1-230ENST00000495090 E2F2Q14209 437 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 GBX1Q14549 363 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 MAD2L1BPQ15013 274 aaPredicted RBP9.51□□□□□ -0.89
SYNE1-230ENST00000495090 TBCEQ15813 527 aaPredicted RBP9.51□□□□□ -0.89
SYNE1-230ENST00000495090 RBBP7Q16576 425 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 SIRPB2Q5JXA9 342 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 TPRG1LQ5T0D9 272 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 ANKRD34AQ69YU3 496 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 CCDC81Q6ZN84 652 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 CCDC103Q8IW40 242 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 ABI1Q8IZP0 508 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 TEX26Q8N6G2 289 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 KBTBD8Q8NFY9 601 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 OR10A6Q8NH74 314 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 GTF2H4Q92759 462 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 RPL3LQ92901 407 aaKnown RBP9.51□□□□□ -0.89
SYNE1-230ENST00000495090 PCED1BQ96HM7 432 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 PYURFQ96I23 114 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 TBATAQ96M53 351 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 GAD1Q99259 594 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 ZBTB18Q99592 522 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 PITX2Q99697 317 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 CCDC32Q9BV29 185 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 MARCH7Q9H992 704 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 CATSPERZQ9NTU4 200 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 EXD2Q9NVH0 621 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 IL37Q9NZH6 218 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 FBXO10Q9UK96 956 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 ANGPTL3Q9Y5C1 460 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 GMPPBQ9Y5P6 360 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 PEX16Q9Y5Y5 336 aa9.51□□□□□ -0.89
SYNE1-230ENST00000495090 OR51F1A6NGY5 319 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 ZBBXA8MT70 800 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-230ENST00000495090 LOC110117498-PIK3R3F6TDL0 507 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 AIREO43918 545 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 FAM20BO75063 409 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 PAGE1O75459 146 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 CREG1O75629 220 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 SERPINF2P08697 491 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 PFKLP17858 780 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 HLA-DPA1P20036 260 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 PRKACGP22612 351 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 GGT5P36269 586 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 DDOSTP39656 456 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 SEPHS1P49903 392 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 ARHGDIAP52565 204 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 EN1Q05925 392 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-230ENST00000495090 CDK10Q15131 360 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 TSNQ15631 228 aaKnown RBP9.5□□□□□ -0.89
SYNE1-230ENST00000495090 SETMARQ53H47 684 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-230ENST00000495090 RUNDC3AQ59EK9 446 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 LAIR1Q6GTX8 287 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 PAQR3Q6TCH7 311 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 DNAJC14Q6Y2X3 702 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-230ENST00000495090 GDPD3Q7L5L3 318 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 SNX20Q7Z614 316 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 CYP4Z1Q86W10 505 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 CALHM3Q86XJ0 350 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 MICALL2Q8IY33 904 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 UMODL1-AS1Q8N2C9 162 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 PARP16Q8N5Y8 322 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 SETD6Q8TBK2 473 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 PIK3R3Q92569 461 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 FCRL2Q96LA5 508 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-230ENST00000495090 PPP3R2Q96LZ3 170 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 ACOX2Q99424 681 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 SIK2Q9H0K1 926 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 GOLGA2P5Q9HBQ8 144 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 PDGFCQ9NRA1 345 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 NDFIP2Q9NV92 336 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 TMEM30AQ9NV96 361 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 UTS2RQ9UKP6 389 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 N6AMT1Q9Y5N5 214 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 BRWD3Q6RI45 1802 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 TNS1Q9HBL0 1735 aaKnown RBP9.5□□□□□ -0.89
SYNE1-230ENST00000495090 TRBV5-3A0A0A0MS03 114 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 H3BRB1 525 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 MUSKO15146 869 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 ZW10O43264 779 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 RHOBTB1O94844 696 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 OR4F21O95013 312 aa9.5□□□□□ -0.89
SYNE1-230ENST00000495090 EPOP01588 193 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms