RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 PXYLP1Q8TE99 480 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 TOP1MTQ969P6 601 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 TMBIM1Q969X1 311 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 AURKBQ96GD4 344 aaPredicted RBP16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 MYOCQ99972 504 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 HOPXQ9BPY8 73 aaPredicted RBP16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 SEZ6LQ9BYH1 1024 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 P2RY12Q9H244 342 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 FARSBQ9NSD9 589 aaKnown RBP16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 ELOVL2Q9NXB9 296 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 PCDHA9Q9Y5H5 950 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 A0A1W2PP18 115 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 STX16O14662 325 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 PRMT5O14744 637 aaPredicted RBP16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 MATN4O95460 622 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 FUCA1P04066 466 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 GSNP06396 782 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 G6PDP11413 515 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 PTGER3P43115 390 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 STK19P49842 368 aaPredicted RBP16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 POLR2JP52435 117 aaKnown RBP16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 RCAN2Q14206 197 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 PTGR1Q14914 329 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 ABRAXAS2Q15018 415 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 CYP2A13Q16696 494 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 PHKG1Q16816 387 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 SBSNQ6UWP8 590 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 ZSWIM9Q86XI8 627 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 MINDY1Q8N5J2 469 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 PROKR1Q8TCW9 393 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 PIH1D2Q8WWB5 315 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 MYLIPQ8WY64 445 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 PLEKHA8Q96JA3 519 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 UHRF1Q96T88 793 aaPredicted RBP16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 TRIM15Q9C019 465 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 TANC1Q9C0D5 1861 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 LHPPQ9H008 270 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 MRGBPQ9NV56 204 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 POLR3HQ9Y535 204 aaPredicted RBP16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 SH3PXD2BA1X283 911 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 OR7A17O14581 309 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 GNGT2O14610 69 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 KLK8O60259 260 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 ABLIM3O94929 683 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 SLC25A14O95258 325 aaPredicted RBP16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 MLYCDO95822 493 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 PRR35P0CG20 571 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 NR6A1Q15406 480 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 GTDC1Q4AE62 458 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 ATP6AP1LQ52LC2 224 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 RFLNAQ6ZTI6 216 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 EGFL8Q99944 293 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 THUMPD3Q9BV44 507 aaKnown RBP16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 TBC1D23Q9NUY8 699 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 PKD2L2Q9NZM6 624 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 SUN2Q9UH99 717 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 PADI4Q9UM07 663 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 OR51B4Q9Y5P0 310 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 UPK3BL1B0FP48 263 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 UPK3BL2E5RIL1 263 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 FZD6O60353 706 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 NOL3O60936 208 aaKnown RBP16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 CTSOP43234 321 aaPredicted RBP16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 CACNG1Q06432 222 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 VEPH1Q14D04 833 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 MAPK11Q15759 364 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 GRAMD4Q6IC98 578 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 R3HCC1LQ7Z5L2 792 aaKnown RBP16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 SLC22A15Q8IZD6 547 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 ADGRG2Q8IZP9 1017 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 DTWD1Q8N5C7 304 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 KLHL23Q8NBE8 558 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 PSD4Q8NDX1 1056 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 CLPBQ9H078 707 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 RBMX2Q9Y388 322 aaKnown RBP16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 BACE2Q9Y5Z0 518 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 RASAL1O95294 804 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 PGLSO95336 258 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 ESR1P03372 595 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 HNF1BP35680 557 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 HMGCLP35914 325 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 PIGAP37287 484 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 DGCR6Q14129 220 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 RFTN2Q52LD8 501 aaPredicted RBP16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 ANKRD26P1Q6NSI1 321 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 SPESP1Q6UW49 350 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 SNX19Q92543 992 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 NCLNQ969V3 563 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 ALG14Q96F25 216 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 NSMCE2Q96MF7 247 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 CSF3RQ99062 836 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 IPPKQ9H8X2 491 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 ZFYVE1Q9HBF4 777 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 IL26Q9NPH9 171 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 POLE4Q9NR33 117 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 DHRS7Q9Y394 339 aa16.22■□□□□ 0.19
CCDC88B-210ENST00000494566 A0A0C4DFX4 3053 aa16.21■□□□□ 0.19
CCDC88B-210ENST00000494566 PFDN6O15212 129 aa16.21■□□□□ 0.19
CCDC88B-210ENST00000494566 FFAR2O15552 330 aa16.21■□□□□ 0.19
CCDC88B-210ENST00000494566 XPNPEP2O43895 674 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms