RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 ADPRHL2Q9NX46 363 aa16.06■□□□□ 0.16
CCDC88B-209ENST00000494080 GRM6O15303 877 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 SPAM1P38567 509 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 SYT16Q17RD7 645 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 PLEKHM3Q6ZWE6 761 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 C8orf48Q96LL4 319 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 INTS10Q9NVR2 710 aaKnown RBP16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 PCDHB1Q9Y5F3 818 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 CDK14O94921 469 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 TALDO1P37837 337 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 CSKP41240 450 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 ZNF773Q6PK81 442 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 GPR180Q86V85 440 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 PLD4Q96BZ4 506 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 FBRSL1Q9HCM7 1045 aaKnown RBP16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 VPS51Q9UID3 782 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 SLC22A1O15245 554 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 ZNF623O75123 536 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 ENO2P09104 434 aaPredicted RBP16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 MTPNP58546 118 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 ALDH6A1Q02252 535 aaKnown RBP16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 SLC15A4Q8N697 577 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 KREMEN2Q8NCW0 462 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 PPP1R16AQ96I34 528 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 APOLD1Q96LR9 279 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 ZNF778Q96MU6 729 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 HEPHQ9BQS7 1158 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 ABCB8Q9NUT2 735 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 EXD2Q9NVH0 621 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 MKS1Q9NXB0 559 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 CEPT1Q9Y6K0 416 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 SESN1Q9Y6P5 492 aa16.05■□□□□ 0.16
CCDC88B-209ENST00000494080 STK16O75716 305 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 GSTM1P09488 218 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 ALPIP09923 528 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 WASP42768 502 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 PIGGQ5H8A4 983 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 LYPLAL1Q5VWZ2 237 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 MAPK15Q8TD08 544 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 ATL1Q8WXF7 558 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 SLC2A13Q96QE2 648 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 SPRTNQ9H040 489 aaPredicted RBP16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 SMOXQ9NWM0 555 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 ASF1AQ9Y294 204 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 ZNF510Q9Y2H8 683 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 KCNE2Q9Y6J6 123 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 ANKDD1BA6NHY2 528 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 MYL12BO14950 172 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 AURKAO14965 403 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 KPNA5O15131 536 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 VILLO15195 856 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 ITGB1P05556 798 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 GSK3BP49841 420 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 AP1S1P61966 158 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 LRRC58Q96CX6 371 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 MUS81Q96NY9 551 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 FCRL3Q96P31 734 aaPredicted RBP16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 EFCAB9A8MZ26 197 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 SNAP29O95721 258 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 ELK4P28324 431 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 FMO3P31513 532 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 RPIAP49247 311 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 PYDC2Q56P42 97 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 SPATA19Q7Z5L4 167 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 NPWQ8N729 165 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 C2orf15Q8WU43 125 aaKnown RBP16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 PANX1Q96RD7 426 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 SLC29A1Q99808 456 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 TCF25Q9BQ70 676 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 RNF186Q9NXI6 227 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 OGDHLQ9ULD0 1010 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 ZNF490Q9ULM2 529 aaPredicted RBP16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 AP3M1Q9Y2T2 418 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 A0A0D9SEW6 157 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 MBLAC1A4D2B0 266 aaPredicted RBP16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 UGT2B11O75310 529 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 TULP3O75386 442 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 CRATP43155 626 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 UBXN11Q5T124 520 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 ZCCHC8Q6NZY4 707 aaKnown RBP16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 PLET1Q6UQ28 207 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 CHST9Q7L1S5 443 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 TRUB1Q8WWH5 349 aaKnown RBP16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 SMG7Q92540 1137 aaKnown RBP16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 NSMCE3Q96MG7 304 aa16.04■□□□□ 0.16
CCDC88B-209ENST00000494080 GABRDO14764 452 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 FGBP02675 491 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 TSPAN19P0C672 248 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 ZNF544Q6NX49 715 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 DPY19L2P1Q6NXN4 242 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 C17orf99Q6UX52 265 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 C2orf73Q8N5S3 287 aaPredicted RBP16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 TMBIM1Q969X1 311 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 GPR22Q99680 433 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 ACTR3BQ9P1U1 418 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 DCLK1O15075 740 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 GSTT2P0CG29 244 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 GSTT2BP0CG30 244 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 CD36P16671 472 aa16.03■□□□□ 0.16
CCDC88B-209ENST00000494080 CASP12Q6UXS9 341 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms