RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 LOXL4Q96JB6 756 aa18.94■□□□□ 0.62
USP39-218ENST00000493829 C12orf66Q96MD2 445 aa18.94■□□□□ 0.62
USP39-218ENST00000493829 ELF4Q99607 663 aaPredicted RBP18.94■□□□□ 0.62
USP39-218ENST00000493829 PRRX2Q99811 253 aa18.94■□□□□ 0.62
USP39-218ENST00000493829 GTPBP2Q9BX10 602 aaKnown RBP18.94■□□□□ 0.62
USP39-218ENST00000493829 DPEP2Q9H4A9 486 aa18.94■□□□□ 0.62
USP39-218ENST00000493829 IL21RQ9HBE5 538 aa18.94■□□□□ 0.62
USP39-218ENST00000493829 CAPN10Q9HC96 672 aa18.94■□□□□ 0.62
USP39-218ENST00000493829 IMP3Q9NV31 184 aaKnown RBP18.94■□□□□ 0.62
USP39-218ENST00000493829 SCHIP1Q9P0W5 487 aaPredicted RBP18.94■□□□□ 0.62
USP39-218ENST00000493829 TAAR2Q9P1P5 351 aa18.94■□□□□ 0.62
USP39-218ENST00000493829 RNF112Q9ULX5 631 aa18.94■□□□□ 0.62
USP39-218ENST00000493829 SLC6A14Q9UN76 642 aa18.94■□□□□ 0.62
USP39-218ENST00000493829 DOLKQ9UPQ8 538 aa18.94■□□□□ 0.62
USP39-218ENST00000493829 LAMA1P25391 3075 aa18.94■□□□□ 0.62
USP39-218ENST00000493829 TRBV23OR9-2A0A075B6M9 112 aa18.93■□□□□ 0.62
USP39-218ENST00000493829 B4DGG1 531 aa18.93■□□□□ 0.62
USP39-218ENST00000493829 AQP9O43315 295 aa18.93■□□□□ 0.62
USP39-218ENST00000493829 MPC1LP0DKB6 136 aa18.93■□□□□ 0.62
USP39-218ENST00000493829 NR1D1P20393 614 aa18.93■□□□□ 0.62
USP39-218ENST00000493829 KPNA2P52292 529 aaKnown RBP18.93■□□□□ 0.62
USP39-218ENST00000493829 ELOCQ15369 112 aa18.93■□□□□ 0.62
USP39-218ENST00000493829 HLA-BQ31612 363 aa18.93■□□□□ 0.62
USP39-218ENST00000493829 TECRLQ5HYJ1 363 aa18.93■□□□□ 0.62
USP39-218ENST00000493829 FRA10AC1Q70Z53 315 aa18.93■□□□□ 0.62
USP39-218ENST00000493829 UBE2R2Q712K3 238 aaPredicted RBP18.93■□□□□ 0.62
USP39-218ENST00000493829 ARMC2Q8NEN0 867 aa18.93■□□□□ 0.62
USP39-218ENST00000493829 MDM1Q8TC05 714 aa18.93■□□□□ 0.62
USP39-218ENST00000493829 SSU72Q9NP77 194 aaKnown RBP18.93■□□□□ 0.62
USP39-218ENST00000493829 SPASTQ9UBP0 616 aa18.93■□□□□ 0.62
USP39-218ENST00000493829 ACSL5Q9ULC5 683 aa18.93■□□□□ 0.62
USP39-218ENST00000493829 GRID1Q9ULK0 1009 aa18.93■□□□□ 0.62
USP39-218ENST00000493829 MYO15AQ9UKN7 3530 aa18.93■□□□□ 0.62
USP39-218ENST00000493829 PCDH15Q96QU1 1955 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 NCF1BA6NI72 391 aaPredicted RBP18.92■□□□□ 0.62
USP39-218ENST00000493829 NCF1CA8MVU1 366 aaPredicted RBP18.92■□□□□ 0.62
USP39-218ENST00000493829 EIF3FO00303 357 aaPredicted RBP18.92■□□□□ 0.62
USP39-218ENST00000493829 IFRD1O00458 451 aaPredicted RBP18.92■□□□□ 0.62
USP39-218ENST00000493829 FFAR2O15552 330 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 PRPF4O43172 522 aaKnown RBP eCLIP18.92■□□□□ 0.62
USP39-218ENST00000493829 KCNJ13O60928 360 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 PIAS2O75928 621 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 NCF1P14598 390 aaPredicted RBP18.92■□□□□ 0.62
USP39-218ENST00000493829 ARRB1P49407 418 aaPredicted RBP18.92■□□□□ 0.62
USP39-218ENST00000493829 ATP1A2P50993 1020 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 PPP2R2AP63151 447 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 PLOD1Q02809 727 aaPredicted RBP18.92■□□□□ 0.62
USP39-218ENST00000493829 BNIP3Q12983 259 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 CLCA4Q14CN2 919 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 ACAP2Q15057 778 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 PHKG1Q16816 387 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 DEFB133Q30KQ1 61 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 LVRNQ6Q4G3 990 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 ISCA2Q86U28 154 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 PHC3Q8NDX5 983 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 DLG3Q92796 817 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 PDLIM5Q96HC4 596 aaKnown RBP18.92■□□□□ 0.62
USP39-218ENST00000493829 PAIP2Q9BPZ3 127 aaKnown RBP18.92■□□□□ 0.62
USP39-218ENST00000493829 ZDHHC5Q9C0B5 715 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 ERVMER34-1Q9H9K5 563 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 ASF1AQ9Y294 204 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 PLLPQ9Y342 182 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 DMDP11532 3685 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 SUPT3HB4E1H0 165 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 SUPT3HO75486 399 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 PROCP04070 461 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 HALP42357 657 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 SHBQ15464 509 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 SLC23A3Q6PIS1 610 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 SBSNQ6UWP8 590 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 MBOAT1Q6ZNC8 495 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 NEK10Q6ZWH5 1172 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 FAM46DQ8NEK8 389 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 OR5AR1Q8NGP9 310 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 PATE1Q8WXA2 126 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 KIAA1191Q96A73 305 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 PKNOX2Q96KN3 472 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 FOPNLQ96NB1 174 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 INSM2Q96T92 566 aaPredicted RBP18.92■□□□□ 0.62
USP39-218ENST00000493829 MRPL46Q9H2W6 279 aaKnown RBP18.92■□□□□ 0.62
USP39-218ENST00000493829 TFB2MQ9H5Q4 396 aaKnown RBP18.92■□□□□ 0.62
USP39-218ENST00000493829 GAREM1Q9H706 876 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 SIRPGQ9P1W8 387 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 PCDHGA5Q9Y5G8 931 aa18.92■□□□□ 0.62
USP39-218ENST00000493829 FRYLO94915 3013 aa18.91■□□□□ 0.62
USP39-218ENST00000493829 PRAMEF33A0A0G2JMD5 474 aa18.91■□□□□ 0.62
USP39-218ENST00000493829 ARHGEF33A8MVX0 844 aa18.91■□□□□ 0.62
USP39-218ENST00000493829 UBXN8O00124 270 aa18.91■□□□□ 0.62
USP39-218ENST00000493829 PLIN3O60664 434 aa18.91■□□□□ 0.62
USP39-218ENST00000493829 MATN4O95460 622 aa18.91■□□□□ 0.62
USP39-218ENST00000493829 GUCA1CO95843 209 aa18.91■□□□□ 0.62
USP39-218ENST00000493829 ACADLP28330 430 aa18.91■□□□□ 0.62
USP39-218ENST00000493829 KCNC1P48547 511 aa18.91■□□□□ 0.62
USP39-218ENST00000493829 UAP1L1Q3KQV9 507 aa18.91■□□□□ 0.62
USP39-218ENST00000493829 CCSMST1Q4G0I0 132 aa18.91■□□□□ 0.62
USP39-218ENST00000493829 EEF1AKMT2Q5JPI9 291 aaKnown RBP18.91■□□□□ 0.62
USP39-218ENST00000493829 ADAMTSL2Q86TH1 951 aa18.91■□□□□ 0.62
USP39-218ENST00000493829 LCA5Q86VQ0 697 aa18.91■□□□□ 0.62
USP39-218ENST00000493829 GATAD2AQ86YP4 633 aa18.91■□□□□ 0.62
USP39-218ENST00000493829 SUMF1Q8NBK3 374 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms