RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 UBE2Q1Q7Z7E8 422 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CHPFQ8IZ52 775 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 FAR1Q8WVX9 515 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RASSF5Q8WWW0 418 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 FAR2Q96K12 515 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CDK5RAP1Q96SZ6 601 aaKnown RBP10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 APOL4Q9BPW4 351 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ROGDIQ9GZN7 287 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 KCNK13Q9HB14 408 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 EHD3Q9NZN3 535 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 GALPQ9UBC7 116 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PTBP2Q9UKA9 531 aaKnown RBP10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 HTRA2O43464 458 aaPredicted RBP10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RNASEH2AO75792 299 aaKnown RBP10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PCNAP12004 261 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CLK3P49761 638 aaKnown RBP10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TYSND1Q2T9J0 566 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ZNF284Q2VY69 593 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 XKR4Q5GH76 650 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 DENND5AQ6IQ26 1287 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SPPL2CQ8IUH8 684 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ASCC1Q8N9N2 400 aaKnown RBP10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TXNDC5Q8NBS9 432 aaKnown RBP10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 GALNT6Q8NCL4 622 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 STAG3L4Q8TBR4 150 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 FIG4Q92562 907 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ZNF347Q96SE7 839 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 MAGEH1Q9H213 219 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TOR4AQ9NXH8 423 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CXXC1Q9P0U4 656 aaPredicted RBP10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 IFT80Q9P2H3 777 aaPredicted RBP10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TPRKBQ9Y3C4 175 aa10.58□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 NUP214P35658 2090 aaPredicted RBP10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 HIDE1A8MVS5 230 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 H3BMM5 538 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SEC22BO75396 215 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 WBP4O75554 376 aaKnown RBP10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SOD2P04179 222 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CYP11A1P05108 521 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 FGF3P11487 239 aaPredicted RBP10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CDH1P12830 882 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 IFI30P13284 250 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PKMP14618 531 aaKnown RBP10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 MAT2AP31153 395 aaKnown RBP10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CTSOP43234 321 aaPredicted RBP10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 NR4A2P43354 598 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 AKR1D1P51857 326 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ZNF135P52742 658 aaPredicted RBP10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CDKL1Q00532 357 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RAB41Q5JT25 222 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PSAPL1Q6NUJ1 521 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SERPINA9Q86WD7 417 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 MMAAQ8IVH4 418 aaKnown RBP10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 GPR156Q8NFN8 814 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 OR9Q1Q8NGQ5 310 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 OR2T34Q8NGX1 318 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 OR2T3Q8NH03 318 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 MAPK15Q8TD08 544 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 HDAC2Q92769 488 aaKnown RBP10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 FAM162AQ96A26 154 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PHF21AQ96BD5 680 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ARPC5LQ9BPX5 153 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CENPOQ9BU64 300 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RUBCNLQ9H714 662 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CSNK1G1Q9HCP0 422 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 NDUFAF1Q9Y375 327 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 AQP9O43315 295 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 NTRK1P04629 796 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SLC35E2BP0CK96 405 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RPS9P46781 194 aaKnown RBP10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CASP9P55211 416 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CDKN2DP55273 166 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SNRPD1P62314 119 aaKnown RBP10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PRKG2Q13237 762 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 NADSYN1Q6IA69 706 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PRR23BQ6ZRT6 265 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TMEM25Q86YD3 366 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CCDC28AQ8IWP9 274 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 BEND7Q8N7W2 519 aaPredicted RBP10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 LRRC20Q8TCA0 184 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 BRSK1Q8TDC3 778 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 EEF1AKMT1Q8WVE0 214 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PPP1R2P1Q96PQ5 205 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CAPN10Q9HC96 672 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 POU2F3Q9UKI9 436 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ANKRD66B4E2M5 251 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 OR4F21O95013 312 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SMIM18P0DKX4 95 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 MYCLP1P12525 358 aaPredicted RBP10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 KCNA5P22460 613 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SEC13P55735 322 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 DSC1Q08554 894 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 FAM98BQ52LJ0 330 aaKnown RBP10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 MBOAT1Q6ZNC8 495 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CCDC149Q6ZUS6 474 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CHST9Q7L1S5 443 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TMEM135Q86UB9 458 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TSPAN33Q86UF1 283 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SVOPQ8N4V2 548 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CANT1Q8WVQ1 401 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms