RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 TBX20Q9UMR3 447 aa2.47□□□□□ -2.01
SMC4-220ENST00000488017 CAPN7Q9Y6W3 813 aa2.47□□□□□ -2.01
SMC4-220ENST00000488017 A0A1W2PRB8 838 aa2.46□□□□□ -2.02
SMC4-220ENST00000488017 MED19A0JLT2 244 aaPredicted RBP2.46□□□□□ -2.02
SMC4-220ENST00000488017 SRRM4A7MD48 611 aaKnown RBP2.46□□□□□ -2.02
SMC4-220ENST00000488017 EIF3CLB5ME19 914 aaKnown RBP2.46□□□□□ -2.02
SMC4-220ENST00000488017 KRTAP4-16G5E9R7 235 aaPredicted RBP2.46□□□□□ -2.02
SMC4-220ENST00000488017 J3QR06 171 aa2.46□□□□□ -2.02
SMC4-220ENST00000488017 GGT5P36269 586 aa2.46□□□□□ -2.02
SMC4-220ENST00000488017 LEPRP48357 1165 aaKnown RBP2.46□□□□□ -2.02
SMC4-220ENST00000488017 EIF3BP55884 814 aaKnown RBP2.46□□□□□ -2.02
SMC4-220ENST00000488017 ADIPOQQ15848 244 aa2.46□□□□□ -2.02
SMC4-220ENST00000488017 MTHFSDQ2M296 383 aaKnown RBP2.46□□□□□ -2.02
SMC4-220ENST00000488017 PRICKLE4Q2TBC4 344 aa2.46□□□□□ -2.02
SMC4-220ENST00000488017 IGFL3Q6UXB1 125 aa2.46□□□□□ -2.02
SMC4-220ENST00000488017 CYP26C1Q6V0L0 522 aa2.46□□□□□ -2.02
SMC4-220ENST00000488017 ABHD12Q8N2K0 398 aa2.46□□□□□ -2.02
SMC4-220ENST00000488017 NUP37Q8NFH4 326 aa2.46□□□□□ -2.02
SMC4-220ENST00000488017 OLIG1Q8TAK6 271 aa2.46□□□□□ -2.02
SMC4-220ENST00000488017 AGAP4Q96P64 663 aa2.46□□□□□ -2.02
SMC4-220ENST00000488017 SEPT5Q99719 369 aaPredicted RBP2.46□□□□□ -2.02
SMC4-220ENST00000488017 MTMR10Q9NXD2 777 aa2.46□□□□□ -2.02
SMC4-220ENST00000488017 NDE1Q9NXR1 346 aa2.46□□□□□ -2.02
SMC4-220ENST00000488017 DGKBQ9Y6T7 804 aa2.46□□□□□ -2.02
SMC4-220ENST00000488017 ABCA7Q8IZY2 2146 aa2.45□□□□□ -2.02
SMC4-220ENST00000488017 TMEM189-UBE2V1I3L0A0 370 aa2.45□□□□□ -2.02
SMC4-220ENST00000488017 TAS2R40P59535 323 aa2.45□□□□□ -2.02
SMC4-220ENST00000488017 PRKAA1Q13131 559 aa2.45□□□□□ -2.02
SMC4-220ENST00000488017 UBE2V1Q13404 147 aa2.45□□□□□ -2.02
SMC4-220ENST00000488017 TRPC3Q13507 836 aa2.45□□□□□ -2.02
SMC4-220ENST00000488017 GPR68Q15743 365 aa2.45□□□□□ -2.02
SMC4-220ENST00000488017 BAK1Q16611 211 aa2.45□□□□□ -2.02
SMC4-220ENST00000488017 LYSMD4Q5XG99 296 aa2.45□□□□□ -2.02
SMC4-220ENST00000488017 BAIAP2L2Q6UXY1 529 aa2.45□□□□□ -2.02
SMC4-220ENST00000488017 SEPT14Q6ZU15 432 aa2.45□□□□□ -2.02
SMC4-220ENST00000488017 RNF168Q8IYW5 571 aaPredicted RBP2.45□□□□□ -2.02
SMC4-220ENST00000488017 ZBED8Q8IZ13 594 aa2.45□□□□□ -2.02
SMC4-220ENST00000488017 SUMF1Q8NBK3 374 aa2.45□□□□□ -2.02
SMC4-220ENST00000488017 PDLIM5Q96HC4 596 aaKnown RBP2.45□□□□□ -2.02
SMC4-220ENST00000488017 MAELQ96JY0 434 aaKnown RBP2.45□□□□□ -2.02
SMC4-220ENST00000488017 UBXN10Q96LJ8 280 aa2.45□□□□□ -2.02
SMC4-220ENST00000488017 MED20Q9H944 212 aa2.45□□□□□ -2.02
SMC4-220ENST00000488017 PPCSQ9HAB8 311 aa2.45□□□□□ -2.02
SMC4-220ENST00000488017 CTSZQ9UBR2 303 aa2.45□□□□□ -2.02
SMC4-220ENST00000488017 CNOT8Q9UFF9 292 aaKnown RBP2.45□□□□□ -2.02
SMC4-220ENST00000488017 NOL12Q9UGY1 213 aaKnown RBP eCLIP2.45□□□□□ -2.02
SMC4-220ENST00000488017 TSPAN16Q9UKR8 245 aa2.45□□□□□ -2.02
SMC4-220ENST00000488017 TNNQ9UQP3 1299 aa2.45□□□□□ -2.02
SMC4-220ENST00000488017 RIPK3Q9Y572 518 aa2.45□□□□□ -2.02
SMC4-220ENST00000488017 SMAD9O15198 467 aaKnown RBP2.44□□□□□ -2.02
SMC4-220ENST00000488017 HOXC11O43248 304 aaPredicted RBP2.44□□□□□ -2.02
SMC4-220ENST00000488017 TNFSF14O43557 240 aa2.44□□□□□ -2.02
SMC4-220ENST00000488017 TMCC2O75069 709 aa2.44□□□□□ -2.02
SMC4-220ENST00000488017 DFFBO76075 338 aa2.44□□□□□ -2.02
SMC4-220ENST00000488017 HNRNPA1P09651 372 aaKnown RBP eCLIP2.44□□□□□ -2.02
SMC4-220ENST00000488017 ACP2P11117 423 aa2.44□□□□□ -2.02
SMC4-220ENST00000488017 CA4P22748 312 aa2.44□□□□□ -2.02
SMC4-220ENST00000488017 PSMC4P43686 418 aa2.44□□□□□ -2.02
SMC4-220ENST00000488017 PTP4A2Q12974 167 aa2.44□□□□□ -2.02
SMC4-220ENST00000488017 PRR30Q53SZ7 412 aaPredicted RBP2.44□□□□□ -2.02
SMC4-220ENST00000488017 RSBN1Q5VWQ0 802 aaPredicted RBP2.44□□□□□ -2.02
SMC4-220ENST00000488017 LINGO4Q6UY18 593 aa2.44□□□□□ -2.02
SMC4-220ENST00000488017 CEACAM19Q7Z692 300 aa2.44□□□□□ -2.02
SMC4-220ENST00000488017 TSPAN33Q86UF1 283 aa2.44□□□□□ -2.02
SMC4-220ENST00000488017 SMAP2Q8WU79 429 aaPredicted RBP2.44□□□□□ -2.02
SMC4-220ENST00000488017 MMABQ96EY8 250 aaPredicted RBP2.44□□□□□ -2.02
SMC4-220ENST00000488017 STRA6Q9BX79 667 aa2.44□□□□□ -2.02
SMC4-220ENST00000488017 SLITRK2Q9H156 845 aa2.44□□□□□ -2.02
SMC4-220ENST00000488017 TNFRSF19Q9NS68 423 aa2.44□□□□□ -2.02
SMC4-220ENST00000488017 DBNLQ9UJU6 430 aaKnown RBP2.44□□□□□ -2.02
SMC4-220ENST00000488017 MKLN1Q9UL63 735 aa2.44□□□□□ -2.02
SMC4-220ENST00000488017 A0A087WUV0 522 aaPredicted RBP2.43□□□□□ -2.02
SMC4-220ENST00000488017 SLC25A12O75746 678 aa2.43□□□□□ -2.02
SMC4-220ENST00000488017 F2RL1P55085 397 aa2.43□□□□□ -2.02
SMC4-220ENST00000488017 GALNT2Q10471 571 aa2.43□□□□□ -2.02
SMC4-220ENST00000488017 BIRC3Q13489 604 aa2.43□□□□□ -2.02
SMC4-220ENST00000488017 C3AR1Q16581 482 aa2.43□□□□□ -2.02
SMC4-220ENST00000488017 MEP1AQ16819 746 aa2.43□□□□□ -2.02
SMC4-220ENST00000488017 EIPR1Q53HC9 387 aa2.43□□□□□ -2.02
SMC4-220ENST00000488017 CEP97Q8IW35 865 aa2.43□□□□□ -2.02
SMC4-220ENST00000488017 KIRREL3Q8IZU9 778 aa2.43□□□□□ -2.02
SMC4-220ENST00000488017 CPSF7Q8N684 471 aaKnown RBP2.43□□□□□ -2.02
SMC4-220ENST00000488017 MAPKAPK5-AS1Q8N8E1 139 aa2.43□□□□□ -2.02
SMC4-220ENST00000488017 NFKBIDQ8NI38 313 aa2.43□□□□□ -2.02
SMC4-220ENST00000488017 TYMSOSQ8TAI1 123 aa2.43□□□□□ -2.02
SMC4-220ENST00000488017 GSDMBQ8TAX9 411 aa2.43□□□□□ -2.02
SMC4-220ENST00000488017 KCNG4Q8TDN1 519 aa2.43□□□□□ -2.02
SMC4-220ENST00000488017 SGCDQ92629 289 aa2.43□□□□□ -2.02
SMC4-220ENST00000488017 DAZLQ92904 295 aaKnown RBP2.43□□□□□ -2.02
SMC4-220ENST00000488017 ZIM3Q96PE6 472 aa2.43□□□□□ -2.02
SMC4-220ENST00000488017 PSMB7Q99436 277 aa2.43□□□□□ -2.02
SMC4-220ENST00000488017 RANGRFQ9HD47 186 aaPredicted RBP2.43□□□□□ -2.02
SMC4-220ENST00000488017 SDR39U1Q9NRG7 319 aaPredicted RBP2.43□□□□□ -2.02
SMC4-220ENST00000488017 SLC13A4Q9UKG4 626 aa2.43□□□□□ -2.02
SMC4-220ENST00000488017 CAMK2AQ9UQM7 478 aa2.43□□□□□ -2.02
SMC4-220ENST00000488017 ZNF510Q9Y2H8 683 aa2.43□□□□□ -2.02
SMC4-220ENST00000488017 MYH15Q9Y2K3 1946 aa2.42□□□□□ -2.02
SMC4-220ENST00000488017 E9PI62 339 aa2.42□□□□□ -2.02
SMC4-220ENST00000488017 TPD52L2O43399 206 aaKnown RBP2.42□□□□□ -2.02
SMC4-220ENST00000488017 KRT6AP02538 564 aa2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms