RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 FANCEQ9HB96 536 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 RDH14Q9HBH5 336 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 LATS2Q9NRM7 1088 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 KCND1Q9NSA2 647 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 SOHLH2Q9NX45 425 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 ZFATQ9P243 1243 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 PISDQ9UG56 409 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 ZC3H7BQ9UGR2 993 aaKnown RBP7.87□□□□□ -1.15
USP40-216ENST00000485943 DMGDHQ9UI17 866 aaKnown RBP7.87□□□□□ -1.15
USP40-216ENST00000485943 CDC23Q9UJX2 597 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 CHMP2BQ9UQN3 213 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 SNX24Q9Y343 169 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 NEU2Q9Y3R4 380 aa7.87□□□□□ -1.15
USP40-216ENST00000485943 GPC6Q9Y625 555 aaPredicted RBP7.87□□□□□ -1.15
USP40-216ENST00000485943 ARID1BQ8NFD5 2236 aaPredicted RBP7.87□□□□□ -1.15
USP40-216ENST00000485943 PTPRBP23467 1997 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 KNTC1P50748 2209 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 TCRBV7S3A2A0A539 114 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 TRABD2BA6NFA1 517 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 GOLGA8KD6RF30 607 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 GOLGA8TH3BQL2 631 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 TGFBR3LH3BV60 316 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 MATN2O00339 956 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 VPS26AO75436 327 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 TOP3BO95985 862 aaKnown RBP7.86□□□□□ -1.15
USP40-216ENST00000485943 PDGFAP04085 211 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 MPOP05164 745 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 MTHFD1P11586 935 aaKnown RBP7.86□□□□□ -1.15
USP40-216ENST00000485943 XRCC1P18887 633 aaPredicted RBP7.86□□□□□ -1.15
USP40-216ENST00000485943 OGNP20774 298 aaKnown RBP7.86□□□□□ -1.15
USP40-216ENST00000485943 CDH3P22223 829 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 FOXN2P32314 431 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 FASLGP48023 281 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 RGS4P49798 205 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 CDKN1CP49918 316 aaPredicted RBP7.86□□□□□ -1.15
USP40-216ENST00000485943 ARSDP51689 593 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 CLDN6P56747 220 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 XIAPP98170 497 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 FOXM1Q08050 763 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 CYP4F3Q08477 520 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 PDIA2Q13087 525 aaKnown RBP7.86□□□□□ -1.15
USP40-216ENST00000485943 ST3GAL2Q16842 350 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 ANKRD20A4Q4UJ75 823 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 KHDC1Q4VXA5 237 aaKnown RBP7.86□□□□□ -1.15
USP40-216ENST00000485943 SPANXN3Q5MJ09 141 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 HP1BP3Q5SSJ5 553 aaPredicted RBP7.86□□□□□ -1.15
USP40-216ENST00000485943 TMTC4Q5T4D3 741 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 RNASEH2BQ5TBB1 312 aaKnown RBP7.86□□□□□ -1.15
USP40-216ENST00000485943 AGAP9Q5VTM2 703 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 NKAIN2Q5VXU1 208 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 ANKRD22Q5VYY1 191 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 KCTD16Q68DU8 428 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 KIAA0930Q6ICG6 404 aaPredicted RBP7.86□□□□□ -1.15
USP40-216ENST00000485943 WASH2PQ6VEQ5 465 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 PACS1Q6VY07 963 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 CCNI2Q6ZMN8 369 aaPredicted RBP7.86□□□□□ -1.15
USP40-216ENST00000485943 TMEM26Q6ZUK4 368 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 TREML1Q86YW5 311 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 KLHDC8BQ8IXV7 354 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 ZBED8Q8IZ13 594 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 CLDN19Q8N6F1 224 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 AGBL5Q8NDL9 886 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 OR13J1Q8NGT2 312 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 LRRC39Q96DD0 335 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 ATXN7L3BQ96GX2 97 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 HSH2DQ96JZ2 352 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 TCF12Q99081 682 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 HGH1Q9BTY7 390 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 KIFC1Q9BW19 673 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 NRSN2Q9GZP1 204 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 MVB12BQ9H7P6 319 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 POLR1BQ9H9Y6 1135 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 WASH6PQ9NQA3 447 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 IARS2Q9NSE4 1012 aaKnown RBP7.86□□□□□ -1.15
USP40-216ENST00000485943 INTS10Q9NVR2 710 aaKnown RBP7.86□□□□□ -1.15
USP40-216ENST00000485943 NSMCE4AQ9NXX6 385 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.86□□□□□ -1.15
USP40-216ENST00000485943 POLG2Q9UHN1 485 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 SATB2Q9UPW6 733 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 CRYL1Q9Y2S2 319 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 LOXL2Q9Y4K0 774 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 IKBKGQ9Y6K9 419 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 PLXNB3Q9ULL4 1909 aa7.86□□□□□ -1.15
USP40-216ENST00000485943 IGHV1OR21-1A0A087WYE8 117 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 LILRA5A6NI73 299 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 ZNF839A8K0R7 811 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 PLD2O14939 933 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 PPM1DO15297 605 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 TMEM63AO94886 807 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 TNFSF15O95150 251 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 SYF2O95926 243 aaKnown RBP7.85□□□□□ -1.15
USP40-216ENST00000485943 ESR1P03372 595 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 FUCA1P04066 466 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 PRSS56P0CW18 603 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 SAT1P21673 171 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 PHBP35232 272 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 PREPP48147 710 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 SEPHS1P49903 392 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 PLTPP55058 493 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 PCBP4P57723 403 aaKnown RBP7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms