RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 POGZQ7Z3K3 1410 aa5.58□□□□□ -1.52
USP40-213ENST00000483216 UQCRHLA0A096LP55 91 aa5.58□□□□□ -1.52
USP40-213ENST00000483216 PRR23AA6NEV1 266 aa5.58□□□□□ -1.52
USP40-213ENST00000483216 LRRC72A6NJI9 287 aa5.58□□□□□ -1.52
USP40-213ENST00000483216 ERVV-2B6SEH9 535 aa5.58□□□□□ -1.52
USP40-213ENST00000483216 PLK4O00444 970 aa5.58□□□□□ -1.52
USP40-213ENST00000483216 IPO8O15397 1037 aaKnown RBP5.58□□□□□ -1.52
USP40-213ENST00000483216 NDUFS4O43181 175 aa5.58□□□□□ -1.52
USP40-213ENST00000483216 PLGP00747 810 aaPredicted RBP5.58□□□□□ -1.52
USP40-213ENST00000483216 PRSS1P07477 247 aa5.58□□□□□ -1.52
USP40-213ENST00000483216 UQCRHP07919 91 aa5.58□□□□□ -1.52
USP40-213ENST00000483216 PRLRP16471 622 aa5.58□□□□□ -1.52
USP40-213ENST00000483216 CDKN1AP38936 164 aa5.58□□□□□ -1.52
USP40-213ENST00000483216 DCTP40126 519 aa5.58□□□□□ -1.52
USP40-213ENST00000483216 NR2C2P49116 596 aa5.58□□□□□ -1.52
USP40-213ENST00000483216 MFAP4P55083 255 aa5.58□□□□□ -1.52
USP40-213ENST00000483216 DUOXA1Q1HG43 343 aa5.58□□□□□ -1.52
USP40-213ENST00000483216 ASPRV1Q53RT3 343 aa5.58□□□□□ -1.52
USP40-213ENST00000483216 ITPRIPL1Q6GPH6 555 aa5.58□□□□□ -1.52
USP40-213ENST00000483216 MZT2BQ6NZ67 158 aa5.58□□□□□ -1.52
USP40-213ENST00000483216 SZRD1Q7Z422 152 aa5.58□□□□□ -1.52
USP40-213ENST00000483216 SLX1AQ9BQ83 275 aa5.58□□□□□ -1.52
USP40-213ENST00000483216 HGH1Q9BTY7 390 aa5.58□□□□□ -1.52
USP40-213ENST00000483216 MAK16Q9BXY0 300 aaKnown RBP5.58□□□□□ -1.52
USP40-213ENST00000483216 TFB2MQ9H5Q4 396 aaKnown RBP5.58□□□□□ -1.52
USP40-213ENST00000483216 AMACRQ9UHK6 382 aa5.58□□□□□ -1.52
USP40-213ENST00000483216 VPS28Q9UK41 221 aa5.58□□□□□ -1.52
USP40-213ENST00000483216 PNMA2Q9UL42 364 aa5.58□□□□□ -1.52
USP40-213ENST00000483216 DDX49Q9Y6V7 483 aaKnown RBP5.58□□□□□ -1.52
USP40-213ENST00000483216 MROH1Q8NDA8 1641 aa5.58□□□□□ -1.52
USP40-213ENST00000483216 ZNF518AQ6AHZ1 1483 aa5.58□□□□□ -1.52
USP40-213ENST00000483216 KIDINS220Q9ULH0 1771 aa5.57□□□□□ -1.52
USP40-213ENST00000483216 A0A0U1RQG5 324 aaPredicted RBP5.57□□□□□ -1.52
USP40-213ENST00000483216 HTATSF1O43719 755 aaKnown RBP5.57□□□□□ -1.52
USP40-213ENST00000483216 PTMAP06454 111 aaKnown RBP5.57□□□□□ -1.52
USP40-213ENST00000483216 LIPFP07098 398 aa5.57□□□□□ -1.52
USP40-213ENST00000483216 MMP9P14780 707 aa5.57□□□□□ -1.52
USP40-213ENST00000483216 ALOX12P18054 663 aa5.57□□□□□ -1.52
USP40-213ENST00000483216 TCEA1P23193 301 aaKnown RBP5.57□□□□□ -1.52
USP40-213ENST00000483216 LINC01547P58512 204 aaPredicted RBP5.57□□□□□ -1.52
USP40-213ENST00000483216 PPP2R2BQ00005 443 aa5.57□□□□□ -1.52
USP40-213ENST00000483216 MBTD1Q05BQ5 628 aa5.57□□□□□ -1.52
USP40-213ENST00000483216 DLG2Q15700 870 aa5.57□□□□□ -1.52
USP40-213ENST00000483216 MEA1Q16626 185 aa5.57□□□□□ -1.52
USP40-213ENST00000483216 PLA2G4FQ68DD2 849 aa5.57□□□□□ -1.52
USP40-213ENST00000483216 SLC27A1Q6PCB7 646 aa5.57□□□□□ -1.52
USP40-213ENST00000483216 PTOV1Q86YD1 416 aa5.57□□□□□ -1.52
USP40-213ENST00000483216 NSUN4Q96CB9 384 aaKnown RBP5.57□□□□□ -1.52
USP40-213ENST00000483216 CEP295NLQ96MC4 621 aa5.57□□□□□ -1.52
USP40-213ENST00000483216 SDF4Q9BRK5 362 aa5.57□□□□□ -1.52
USP40-213ENST00000483216 DENND2DQ9H6A0 471 aaPredicted RBP5.57□□□□□ -1.52
USP40-213ENST00000483216 ZBTB20Q9HC78 741 aaPredicted RBP5.57□□□□□ -1.52
USP40-213ENST00000483216 PRDM4Q9UKN5 801 aa5.57□□□□□ -1.52
USP40-213ENST00000483216 LMTK2Q8IWU2 1503 aa5.57□□□□□ -1.52
USP40-213ENST00000483216 PIK3C2GO75747 1445 aa5.57□□□□□ -1.52
USP40-213ENST00000483216 IQGAP1P46940 1657 aa5.56□□□□□ -1.52
USP40-213ENST00000483216 REREQ9P2R6 1566 aa5.56□□□□□ -1.52
USP40-213ENST00000483216 B4DLN1 442 aa5.56□□□□□ -1.52
USP40-213ENST00000483216 PAPSS1O43252 624 aaPredicted RBP5.56□□□□□ -1.52
USP40-213ENST00000483216 TSPAN9O75954 239 aa5.56□□□□□ -1.52
USP40-213ENST00000483216 RSL1D1O76021 490 aaKnown RBP5.56□□□□□ -1.52
USP40-213ENST00000483216 KRT19P08727 400 aa5.56□□□□□ -1.52
USP40-213ENST00000483216 NMBRP28336 390 aa5.56□□□□□ -1.52
USP40-213ENST00000483216 SLC15A1P46059 708 aa5.56□□□□□ -1.52
USP40-213ENST00000483216 GLIPR1P48060 266 aa5.56□□□□□ -1.52
USP40-213ENST00000483216 MMP15P51511 669 aa5.56□□□□□ -1.52
USP40-213ENST00000483216 SUOXP51687 545 aa5.56□□□□□ -1.52
USP40-213ENST00000483216 MRPL12P52815 198 aaKnown RBP5.56□□□□□ -1.52
USP40-213ENST00000483216 CXCL9Q07325 125 aa5.56□□□□□ -1.52
USP40-213ENST00000483216 NDUFAF5Q5TEU4 345 aa5.56□□□□□ -1.52
USP40-213ENST00000483216 SLC35E4Q6ICL7 350 aa5.56□□□□□ -1.52
USP40-213ENST00000483216 TBC1D29Q9UFV1 150 aa5.56□□□□□ -1.52
USP40-213ENST00000483216 DDX19BQ9UMR2 479 aa5.56□□□□□ -1.52
USP40-213ENST00000483216 PCDHGA5Q9Y5G8 931 aa5.56□□□□□ -1.52
USP40-213ENST00000483216 EFCAB6Q5THR3 1501 aa5.56□□□□□ -1.52
USP40-213ENST00000483216 KIAA1210Q9ULL0 1709 aa5.56□□□□□ -1.52
USP40-213ENST00000483216 WDR81Q562E7 1941 aa5.56□□□□□ -1.52
USP40-213ENST00000483216 ARHGAP31Q2M1Z3 1444 aa5.56□□□□□ -1.52
USP40-213ENST00000483216 PLEKHH1Q9ULM0 1364 aa5.55□□□□□ -1.52
USP40-213ENST00000483216 HECW2Q9P2P5 1572 aa5.55□□□□□ -1.52
USP40-213ENST00000483216 TEX13DA0A0J9YY54 714 aaPredicted RBP5.55□□□□□ -1.52
USP40-213ENST00000483216 GCNT3O95395 438 aa5.55□□□□□ -1.52
USP40-213ENST00000483216 LDLRP01130 860 aa5.55□□□□□ -1.52
USP40-213ENST00000483216 CSH1P0DML2 217 aa5.55□□□□□ -1.52
USP40-213ENST00000483216 CSH2P0DML3 217 aa5.55□□□□□ -1.52
USP40-213ENST00000483216 PNLIPRP2P54317 469 aa5.55□□□□□ -1.52
USP40-213ENST00000483216 INTS8Q75QN2 995 aaKnown RBP5.55□□□□□ -1.52
USP40-213ENST00000483216 TBC1D16Q8TBP0 767 aa5.55□□□□□ -1.52
USP40-213ENST00000483216 STAMBPL1Q96FJ0 436 aa5.55□□□□□ -1.52
USP40-213ENST00000483216 ZNF354BQ96LW1 612 aa5.55□□□□□ -1.52
USP40-213ENST00000483216 TESK2Q96S53 571 aa5.55□□□□□ -1.52
USP40-213ENST00000483216 APOBEC3GQ9HC16 384 aaKnown RBP5.55□□□□□ -1.52
USP40-213ENST00000483216 WSB2Q9NYS7 404 aaPredicted RBP5.55□□□□□ -1.52
USP40-213ENST00000483216 ATP6V1DQ9Y5K8 247 aa5.55□□□□□ -1.52
USP40-213ENST00000483216 MYOM2P54296 1465 aa5.55□□□□□ -1.52
USP40-213ENST00000483216 MLH3Q9UHC1 1453 aa5.55□□□□□ -1.52
USP40-213ENST00000483216 KIF1BO60333 1816 aa5.55□□□□□ -1.52
USP40-213ENST00000483216 DISP3Q9P2K9 1392 aa5.55□□□□□ -1.52
USP40-213ENST00000483216 ASTN2O75129 1339 aaPredicted RBP5.54□□□□□ -1.52
USP40-213ENST00000483216 SCAF11Q99590 1463 aaKnown RBP5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms