RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 SMARCE1Q969G3 411 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 RELTQ969Z4 430 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 ISL2Q96A47 359 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 SGSM3Q96HU1 749 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 PSKH2Q96QS6 385 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 TAAR6Q96RI8 345 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 NUDCD1Q96RS6 583 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 SLX1AQ9BQ83 275 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 TLR10Q9BXR5 811 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 NLNQ9BYT8 704 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 OR2AG1Q9H205 316 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 EPB41L1Q9H4G0 881 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 STN1Q9H668 368 aaKnown RBP5.14□□□□□ -1.59
PTPN4-209ENST00000469511 UCK1Q9HA47 277 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 SP110Q9HB58 689 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 AGPAT4Q9NRZ5 378 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 RMND1Q9NWS8 449 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 EPHA6Q9UF33 1036 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 NOCTQ9UK39 431 aaKnown RBP5.14□□□□□ -1.59
PTPN4-209ENST00000469511 TMPRSS11EQ9UL52 423 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 CHKBQ9Y259 395 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 PPIL1Q9Y3C6 166 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 KLF2Q9Y5W3 355 aaPredicted RBP5.14□□□□□ -1.59
PTPN4-209ENST00000469511 CFAP20Q9Y6A4 193 aaKnown RBP5.14□□□□□ -1.59
PTPN4-209ENST00000469511 CPAMD8Q8IZJ3 1885 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 A0A0J9YYE9 177 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 A0A1B0GUH1 482 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.13□□□□□ -1.59
PTPN4-209ENST00000469511 ARHGAP42A6NI28 874 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 OR5K4A6NMS3 321 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 PDZK1P1A8MUH7 402 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 EEF2KO00418 725 aaKnown RBP5.13□□□□□ -1.59
PTPN4-209ENST00000469511 CCL21O00585 134 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 SMAD7O15105 426 aaKnown RBP5.13□□□□□ -1.59
PTPN4-209ENST00000469511 KLHL18O94889 574 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 TRBC1P01850 177 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 KRT3P12035 628 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 CD99P14209 185 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 ZNF7P17097 686 aaPredicted RBP5.13□□□□□ -1.59
PTPN4-209ENST00000469511 MST1P26927 711 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 KLK7P49862 253 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 CLCNKAP51800 687 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 KPNA2P52292 529 aaKnown RBP5.13□□□□□ -1.59
PTPN4-209ENST00000469511 ART1P52961 327 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 AP1S1P61966 158 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 PDE1BQ01064 536 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 DSC2Q02487 901 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 TLE4Q04727 773 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 CDC16Q13042 620 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 SLBPQ14493 270 aaKnown RBP eCLIP5.13□□□□□ -1.59
PTPN4-209ENST00000469511 SLC9A5Q14940 896 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 NKG7Q16617 165 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 SMTNL2Q2TAL5 461 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 HENMT1Q5T8I9 393 aaKnown RBP5.13□□□□□ -1.59
PTPN4-209ENST00000469511 CDPF1Q6NVV7 123 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 ABRAXAS1Q6UWZ7 409 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 FAM83HQ6ZRV2 1179 aaPredicted RBP5.13□□□□□ -1.59
PTPN4-209ENST00000469511 CYP4V2Q6ZWL3 525 aaPredicted RBP5.13□□□□□ -1.59
PTPN4-209ENST00000469511 PPP1R32Q7Z5V6 425 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 C11orf96Q7Z7L8 435 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 HPS6Q86YV9 775 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 TRIM48Q8IWZ4 208 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 SYTL1Q8IYJ3 562 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 AOPEPQ8N6M6 819 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 GPR26Q8NDV2 337 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 FAM13CQ8NE31 585 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 DNAJB14Q8TBM8 379 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 SEC14L1Q92503 715 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 CLIP3Q96DZ5 547 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 ZDHHC12Q96GR4 267 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 MEGF10Q96KG7 1140 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 FCRL4Q96PJ5 515 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 SMR3AQ99954 134 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 WDR77Q9BQA1 342 aaPredicted RBP5.13□□□□□ -1.59
PTPN4-209ENST00000469511 SSBP4Q9BWG4 385 aaPredicted RBP5.13□□□□□ -1.59
PTPN4-209ENST00000469511 YIPF2Q9BWQ6 316 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 NAA15Q9BXJ9 866 aaKnown RBP5.13□□□□□ -1.59
PTPN4-209ENST00000469511 RAB33BQ9H082 229 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 KLHL25Q9H0H3 589 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 VPS16Q9H269 839 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 DHX35Q9H5Z1 703 aaKnown RBP5.13□□□□□ -1.59
PTPN4-209ENST00000469511 CATSPERBQ9H7T0 1116 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 P4HTMQ9NXG6 502 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 VPS18Q9P253 973 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 PCSK1NQ9UHG2 260 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 PSMD13Q9UNM6 376 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 CDYLQ9Y232 598 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 PCDHGB6Q9Y5F9 930 aa5.13□□□□□ -1.59
PTPN4-209ENST00000469511 TRGV8A0A0C4DH27 118 aa5.12□□□□□ -1.59
PTPN4-209ENST00000469511 A0A1W2PQJ5 194 aa5.12□□□□□ -1.59
PTPN4-209ENST00000469511 SLC9B1P1A6NJY1 282 aa5.12□□□□□ -1.59
PTPN4-209ENST00000469511 KIAA1324LA8MWY0 1029 aaPredicted RBP5.12□□□□□ -1.59
PTPN4-209ENST00000469511 PCDH17O14917 1159 aa5.12□□□□□ -1.59
PTPN4-209ENST00000469511 CHUKO15111 745 aa5.12□□□□□ -1.59
PTPN4-209ENST00000469511 FGF10O15520 208 aaPredicted RBP5.12□□□□□ -1.59
PTPN4-209ENST00000469511 KCNN4O15554 427 aa5.12□□□□□ -1.59
PTPN4-209ENST00000469511 MAFKO60675 156 aa5.12□□□□□ -1.59
PTPN4-209ENST00000469511 SOCS5O75159 536 aa5.12□□□□□ -1.59
PTPN4-209ENST00000469511 GFPT2O94808 682 aa5.12□□□□□ -1.59
PTPN4-209ENST00000469511 F10P00742 488 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms