RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 SLC2A3P11169 496 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 NUDT6P53370 316 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 ERVK-8P63133 956 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 NFKB2Q00653 900 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 ACOX1Q15067 660 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 NR6A1Q15406 480 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 SGO1Q5FBB7 561 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 CYP20A1Q6UW02 462 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 SPATA19Q7Z5L4 167 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 CCDC71Q8IV32 467 aaPredicted RBP11.51□□□□□ -0.57
CPSF3-202ENST00000460593 SLC38A6Q8IZM9 456 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 TCAIMQ8N3R3 496 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 ZNF548Q8NEK5 533 aaPredicted RBP11.51□□□□□ -0.57
CPSF3-202ENST00000460593 AGBL3Q8NEM8 1001 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 SCAMP5Q8TAC9 235 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 ZFP42Q96MM3 310 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 TSGA13Q96PP4 275 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 DEPDC7Q96QD5 511 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 CYP2S1Q96SQ9 504 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 SLC9A7Q96T83 725 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 KCNS3Q9BQ31 491 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 SPATC1LQ9H0A9 340 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 ZFP14Q9HCL3 533 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 GJA3Q9Y6H8 435 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 M0R129 80 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 MEN1O00255 615 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 RHOBTB1O94844 696 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 ZNF682O95780 498 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 CCDC159P0C7I6 412 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 AZGP1P25311 298 aaKnown RBP11.51□□□□□ -0.57
CPSF3-202ENST00000460593 HCAR3P49019 387 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 DAPP51397 102 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 GALK2Q01415 458 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 TNFAIP1Q13829 316 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 IRF3Q14653 427 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 INTS6LQ5JSJ4 861 aaKnown RBP11.51□□□□□ -0.57
CPSF3-202ENST00000460593 LETMD1Q6P1Q0 360 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 ANKRD46Q86W74 232 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 PGBD5Q8N414 524 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 ARRDC4Q8NCT1 418 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 B3GALT6Q96L58 329 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 ZNF599Q96NL3 588 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 NFKBIZQ9BYH8 718 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 PDGFDQ9GZP0 370 aaPredicted RBP11.51□□□□□ -0.57
CPSF3-202ENST00000460593 SARS2Q9NP81 518 aaKnown RBP11.51□□□□□ -0.57
CPSF3-202ENST00000460593 SLC25A37Q9NYZ2 338 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 ZNF451Q9Y4E5 1061 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 ORC6Q9Y5N6 252 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 MEIS3P2A8K0S8 358 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 FFAR3O14843 346 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 GPR42O15529 346 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 PAGE1O75459 146 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 VIPP01282 170 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 AFF1P51825 1210 aaKnown RBP11.5□□□□□ -0.57
CPSF3-202ENST00000460593 ERVPABLB-1P60509 514 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 FAM174BQ3ZCQ3 159 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 PAN2Q504Q3 1202 aaKnown RBP11.5□□□□□ -0.57
CPSF3-202ENST00000460593 XKR7Q5GH72 579 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 CEP78Q5JTW2 689 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 SIRPB2Q5JXA9 342 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 AGAP6Q5VW22 663 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 LBX2Q6XYB7 198 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 LRRC8DQ7L1W4 858 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 BHLHA9Q7RTU4 235 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 GALNT12Q8IXK2 581 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 REXO5Q96IC2 774 aaKnown RBP11.5□□□□□ -0.57
CPSF3-202ENST00000460593 AGAP4Q96P64 663 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 CHCHD6Q9BRQ6 235 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 CDADC1Q9BWV3 514 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 BRINP2Q9C0B6 783 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 IRF2BPLQ9H1B7 796 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 DUSP21Q9H596 190 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 TAS2R16Q9NYV7 291 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 UXTQ9UBK9 157 aaPredicted RBP11.5□□□□□ -0.57
CPSF3-202ENST00000460593 M0R082 166 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 CTDSP2O14595 271 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 CAPN1P07384 714 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 HSMCR30P0CW71 290 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 HAPLN1P10915 354 aaPredicted RBP11.5□□□□□ -0.57
CPSF3-202ENST00000460593 GMPSP49915 693 aaPredicted RBP11.5□□□□□ -0.57
CPSF3-202ENST00000460593 HK3P52790 923 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 CREMQ03060 361 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 FXNQ16595 210 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 ZFP69Q49AA0 526 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 DCAF15Q66K64 600 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 PM20D1Q6GTS8 502 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 NRARPQ7Z6K4 114 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 MSRB3Q8IXL7 192 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 MICALL2Q8IY33 904 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 CHPFQ8IZ52 775 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 UBE2J2Q8N2K1 259 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 OR5K1Q8NHB7 308 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 CENPOQ9BU64 300 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 PRKD2Q9BZL6 878 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 TXNRD2Q9NNW7 524 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 GIMAP4Q9NUV9 329 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 SCN3BQ9NY72 215 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 EHD3Q9NZN3 535 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 TPRKBQ9Y3C4 175 aa11.5□□□□□ -0.57
CPSF3-202ENST00000460593 ZSCAN5BA6NJL1 495 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms