RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	ASF1A	Q9Y294	204 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	ST14	Q9Y5Y6	855 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947		B4E171	279 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	CD1C	P29017	333 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	CSTF2	P33240	577 aa	Known RBP eCLIP	10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	DEK	P35659	375 aa	Known RBP	10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	TSPAN7	P41732	249 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	SLC12A2	P55011	1212 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	OR1D5	P58170	312 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	GBX1	Q14549	363 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	CLCA4	Q14CN2	919 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	KYNU	Q16719	465 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	MSS51	Q4VC12	460 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	TMTC4	Q5T4D3	741 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	LCN9	Q8WX39	176 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	RHOJ	Q9H4E5	214 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	INTS7	Q9NVH2	962 aa	Known RBP	10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	OR6C2	Q9NZP2	312 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	MED19	A0JLT2	244 aa	Predicted RBP	10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	OR1I1	O60431	355 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	ACADL	P28330	430 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	CTSL3P	Q5NE16	218 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	TEDDM1	Q5T9Z0	273 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	ZDHHC24	Q6UX98	284 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	SLITRK4	Q8IW52	837 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	OR5K2	Q8NHB8	316 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	SRMS	Q9H3Y6	488 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	PPCS	Q9HAB8	311 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	LNPEP	Q9UIQ6	1025 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	PCDHB11	Q9Y5F2	797 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947		A0A0C4DFX4	3053 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947		A0A1W2PQM1	296 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	CCNDBP1	O95273	360 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	C8G	P07360	202 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	PRSS56	P0CW18	603 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	RPL10	P27635	214 aa	Known RBP	10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	TNFRSF8	P28908	595 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	SPR	P35270	261 aa	Predicted RBP	10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	GP5	P40197	560 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	ERVPABLB-1	P60509	514 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	GPR18	Q14330	331 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	ARHGAP19	Q14CB8	494 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	GRTP1	Q5TC63	336 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	CCDC25	Q86WR0	208 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	OR8K5	Q8NH50	307 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	PKNOX2	Q96KN3	472 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	BIRC8	Q96P09	236 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	FCRL4	Q96PJ5	515 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	FBXO6	Q9NRD1	293 aa	Predicted RBP	10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	SCHIP1	Q9P0W5	487 aa	Predicted RBP	10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	PSMD13	Q9UNM6	376 aa		10.43	□□□□□ -0.74
UBR4-208	ENST00000459947	OR5K3	A6NET4	321 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	TLCD2	A6NGC4	264 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	C2orf74	A8MZ97	194 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	THRA	P10827	490 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	CCR7	P32248	378 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	HSPA14	Q0VDF9	509 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	TARDBP	Q13148	414 aa	Known RBP eCLIP	10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	KIR2DS3	Q14952	304 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	KLHL38	Q2WGJ6	581 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	AMZ1	Q400G9	498 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	TRMT10C	Q7L0Y3	403 aa	Known RBP	10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	ANKMY2	Q8IV38	441 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	MYO1H	Q8N1T3	1032 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	FBXO39	Q8N4B4	442 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	NKAP	Q8N5F7	415 aa	Known RBP	10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	PATE1	Q8WXA2	126 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	TRIM54	Q9BYV2	358 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	THSD1	Q9NS62	852 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	ZDHHC18	Q9NUE0	388 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	SEMA5B	Q9P283	1151 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	ERVK-10	P10266	1014 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	MAP4	P27816	1152 aa	Known RBP	10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	POU4F1	Q01851	419 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	PDAP1	Q13442	181 aa	Known RBP	10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	CYTH2	Q99418	400 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	FUT8	Q9BYC5	575 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	UTP6	Q9NYH9	597 aa	Known RBP	10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	WDR37	Q9Y2I8	494 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	PCDHGA7	Q9Y5G6	932 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	TRBV23OR9-2	A0A075B6M9	112 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	FAM159B	A6NKW6	160 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	EML2	O95834	649 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	ABHD2	P08910	425 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	ENO2	P09104	434 aa	Predicted RBP	10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	JMJD7	P0C870	316 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	CYP2A7	P20853	494 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	ARL4D	P49703	201 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	SERPINB9	P50453	376 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	PHF19	Q5T6S3	580 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	AGGF1	Q8N302	714 aa	eCLIP	10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	PNPLA1	Q8N8W4	532 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	CHRNA10	Q9GZZ6	450 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	CCDC86	Q9H6F5	360 aa	Known RBP	10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	FANCE	Q9HB96	536 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	KLK13	Q9UKR3	277 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	SLC39A10	Q9ULF5	831 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	CRYL1	Q9Y2S2	319 aa		10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	10.42	□□□□□ -0.74
UBR4-208	ENST00000459947	CNTF	P26441	200 aa		10.41	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms