RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 BLOC1S6Q9UL45 172 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 ZNF490Q9ULM2 529 aaPredicted RBP8.5□□□□□ -1.05
USP40-203ENST00000427112 ALPK2Q86TB3 2170 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 CHD7Q9P2D1 2997 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 CKAP5Q14008 2032 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 C2orf81A6NN90 581 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 FGF10O15520 208 aaPredicted RBP8.5□□□□□ -1.05
USP40-203ENST00000427112 TBC1D4O60343 1298 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 ADAM23O75077 832 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 LCKP06239 509 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 RHOCP08134 193 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 PKMP14618 531 aaKnown RBP8.5□□□□□ -1.05
USP40-203ENST00000427112 TACR2P21452 398 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 CDKN2CP42773 168 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 OR1E2P47887 323 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 ATP6V0D1P61421 351 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 SFSWAPQ12872 951 aaKnown RBP8.5□□□□□ -1.05
USP40-203ENST00000427112 SLC14A1Q13336 389 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 PLD1Q13393 1074 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 FAM98BQ52LJ0 330 aaKnown RBP8.5□□□□□ -1.05
USP40-203ENST00000427112 CES5AQ6NT32 575 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 MSANTD2Q6P1R3 559 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 GLB1LQ6UWU2 654 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 GOLGA7Q7Z5G4 137 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 PHYKPLQ8IUZ5 450 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 OR56A4Q8NGH8 313 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 CAPSLQ8WWF8 208 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 FAM120BQ96EK7 910 aaKnown RBP8.5□□□□□ -1.05
USP40-203ENST00000427112 RAD21L1Q9H4I0 556 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 VNN3Q9NY84 501 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 GPRC5BQ9NZH0 403 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 UBA2Q9UBT2 640 aaPredicted RBP8.5□□□□□ -1.05
USP40-203ENST00000427112 MBD1Q9UIS9 605 aaPredicted RBP8.5□□□□□ -1.05
USP40-203ENST00000427112 PCTPQ9UKL6 214 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 PCDHGA11Q9Y5H2 935 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 SQORQ9Y6N5 450 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 RASAL1O95294 804 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 CLDN7O95471 211 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 MYF6P23409 242 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 SCNN1AP37088 669 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 RPS3AP61247 264 aaKnown RBP8.5□□□□□ -1.05
USP40-203ENST00000427112 TUSC3Q13454 348 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 KCNA10Q16322 511 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 CD300LGQ6UXG3 332 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 DCDC5Q6ZRR9 648 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 TSPAN33Q86UF1 283 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 MICU2Q8IYU8 434 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 TMEM199Q8N511 208 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 ZNF555Q8NEP9 628 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 MCOLN3Q8TDD5 553 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 DPF3Q92784 378 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 TSGA13Q96PP4 275 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 SATB2Q9UPW6 733 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 CACNA1CQ13936 2221 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 SH3PXD2BA1X283 911 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 C2orf78A6NCI8 922 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 SMAD6O43541 496 aaKnown RBP8.49□□□□□ -1.05
USP40-203ENST00000427112 BCAS1O75363 584 aaPredicted RBP8.49□□□□□ -1.05
USP40-203ENST00000427112 DEAF1O75398 565 aaPredicted RBP8.49□□□□□ -1.05
USP40-203ENST00000427112 STATHP02808 62 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 ANXA6P08133 673 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 CDH3P22223 829 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 CCND3P30281 292 aaPredicted RBP8.49□□□□□ -1.05
USP40-203ENST00000427112 ATN1P54259 1190 aaPredicted RBP8.49□□□□□ -1.05
USP40-203ENST00000427112 MVKQ03426 396 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 TRAP1Q12931 704 aaKnown RBP8.49□□□□□ -1.05
USP40-203ENST00000427112 SERINC3Q13530 473 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 CTSL3PQ5NE16 218 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 IER5LQ5T953 404 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 KANK2Q63ZY3 851 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 OR4F3Q6IEY1 312 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 SPATC1Q76KD6 591 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 SZRD1Q7Z422 152 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 LIMS2Q7Z4I7 341 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 DEFB128Q7Z7B8 93 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 ATP6V0D2Q8N8Y2 350 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 ZNF540Q8NDQ6 660 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 UTP15Q8TED0 518 aaKnown RBP8.49□□□□□ -1.05
USP40-203ENST00000427112 CEP295NLQ96MC4 621 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 HOPXQ9BPY8 73 aaPredicted RBP8.49□□□□□ -1.05
USP40-203ENST00000427112 RUBCNLQ9H714 662 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 TRIM39Q9HCM9 518 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 ZDHHC4Q9NPG8 344 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 MRPL40Q9NQ50 206 aaKnown RBP8.49□□□□□ -1.05
USP40-203ENST00000427112 PAK1IP1Q9NWT1 392 aaPredicted RBP8.49□□□□□ -1.05
USP40-203ENST00000427112 KIF17Q9P2E2 1029 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 RHCGQ9UBD6 479 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 DLGAP4Q9Y2H0 992 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 ZNF510Q9Y2H8 683 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 SH3GLB1Q9Y371 365 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 SYNDIG1LA6NDD5 238 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 TBX1O43435 398 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 DLGAP3O95886 979 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 NUDT7P0C024 238 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 CCDC159P0C7I6 412 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 ACPPP15309 386 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 AZGP1P25311 298 aaKnown RBP8.49□□□□□ -1.05
USP40-203ENST00000427112 RHOAP61586 193 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 RELAQ04206 551 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 GTF2H2Q13888 395 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms