RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 E9PAM4 449 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 CLDN5O00501 218 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 CTDSP2O14595 271 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 PGK1P00558 417 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 TGFBR1P36897 503 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 RPL35P42766 123 aaKnown RBP9.17□□□□□ -0.94
COL28A1-201ENST00000399429 DCDC1P59894 354 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 DEFA5Q01523 94 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 FOXM1Q08050 763 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 FGFBP1Q14512 234 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 ZMYND11Q15326 602 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 FBXO47Q5MNV8 452 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 C15orf39Q6ZRI6 1047 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 CCDC117Q8IWD4 279 aaPredicted RBP9.17□□□□□ -0.94
COL28A1-201ENST00000399429 SIMC1Q8NDZ2 872 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 ZNF675Q8TD23 568 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 FAM151AQ8WW52 585 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 ARNTL2Q8WYA1 636 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 GTPBP3Q969Y2 492 aaKnown RBP9.17□□□□□ -0.94
COL28A1-201ENST00000399429 PPP3R2Q96LZ3 170 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 FYTTD1Q96QD9 318 aaKnown RBP9.17□□□□□ -0.94
COL28A1-201ENST00000399429 PSD2Q9BQI7 771 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 TEX12Q9BXU0 123 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 QPCTLQ9NXS2 382 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 RGPD8O14715 1765 aaPredicted RBP9.16□□□□□ -0.94
COL28A1-201ENST00000399429 KCPQ6ZWJ8 1503 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 NPEPPSL1A6NEC2 478 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 CYP2C18P33260 490 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 TAF6P49848 677 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 GMPSP49915 693 aaPredicted RBP9.16□□□□□ -0.94
COL28A1-201ENST00000399429 KYAT1Q16773 422 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 SOWAHAQ2M3V2 549 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 DCAF15Q66K64 600 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 NIM1KQ8IY84 436 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 OR6C4Q8NGE1 309 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 PHF10Q8WUB8 498 aaKnown RBP9.16□□□□□ -0.94
COL28A1-201ENST00000399429 MUL1Q969V5 352 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 DPCDQ9BVM2 203 aaPredicted RBP9.16□□□□□ -0.94
COL28A1-201ENST00000399429 ASPNQ9BXN1 380 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 CHIAQ9BZP6 476 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 POLR2J2Q9GZM3 115 aaKnown RBP9.16□□□□□ -0.94
COL28A1-201ENST00000399429 SLC35C2Q9NQQ7 365 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 ABCB8Q9NUT2 735 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 ZNF70Q9UC06 446 aaPredicted RBP9.16□□□□□ -0.94
COL28A1-201ENST00000399429 DNAJC15Q9Y5T4 150 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 PLIN4Q96Q06 1357 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 FADS2P1A8MWK0 482 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 VIPP01282 170 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 FHP07954 510 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 SERPINF2P08697 491 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 ZNF806P0C7X5 589 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 EVI2BP34910 448 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 RECQLP46063 649 aaPredicted RBP9.16□□□□□ -0.94
COL28A1-201ENST00000399429 RENBPP51606 427 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 APLP1P51693 650 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 PURAQ00577 322 aaKnown RBP9.16□□□□□ -0.94
COL28A1-201ENST00000399429 NOMO2Q5JPE7 1267 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 PAGE3Q5JUK9 113 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 CATSPEREQ5SY80 951 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 HACD2Q6Y1H2 254 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 ZNF767PQ75MW2 155 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 TP53INP2Q8IXH6 220 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 FERD3LQ96RJ6 166 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 WACQ9BTA9 647 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 OR51E2Q9H255 320 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 GLOD4Q9HC38 313 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 PDGFCQ9NRA1 345 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 GALPQ9UBC7 116 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 KCNN3Q9UGI6 736 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 SPATA31A5Q5VU36 1347 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 SPATA31A7Q8IWB4 1347 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 FAM92AA1XBS5 289 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 C2orf81A6NN90 581 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 A8MX80 341 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 JRKO75564 520 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 PRAMEF1O95521 474 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 PLATP00750 562 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 EFNA1P20827 205 aaPredicted RBP9.16□□□□□ -0.94
COL28A1-201ENST00000399429 TGM1P22735 817 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 GLUD2P49448 558 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 ERVK-8P63133 956 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 BCL2A1Q16548 175 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 ZNF648Q5T619 568 aaPredicted RBP9.16□□□□□ -0.94
COL28A1-201ENST00000399429 MAP1SQ66K74 1059 aaPredicted RBP9.16□□□□□ -0.94
COL28A1-201ENST00000399429 OR2T5Q6IEZ7 315 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 TMEM192Q8IY95 271 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 OR2T29Q8NH02 315 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 VANGL1Q8TAA9 524 aaPredicted RBP9.16□□□□□ -0.94
COL28A1-201ENST00000399429 CRYGNQ8WXF5 182 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 RIT1Q92963 219 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 IL4I1Q96RQ9 567 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 AIFM2Q9BRQ8 373 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 ANKRA2Q9H9E1 313 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 GBA2Q9HCG7 927 aaPredicted RBP9.16□□□□□ -0.94
COL28A1-201ENST00000399429 HOXC10Q9NYD6 342 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 EIF2B4Q9UI10 523 aaKnown RBP9.16□□□□□ -0.94
COL28A1-201ENST00000399429 AKAP11Q9UKA4 1901 aa9.16□□□□□ -0.94
COL28A1-201ENST00000399429 MYH9P35579 1960 aaKnown RBP9.15□□□□□ -0.94
COL28A1-201ENST00000399429 FAM220BPB1ANY3 271 aa9.15□□□□□ -0.94
COL28A1-201ENST00000399429 TNFRSF11BO00300 401 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms