RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 RIC8BQ9NVN3 520 aa14.76□□□□□ -0.05
GPC3-202ENST00000394299 SUCOQ9UBS9 1254 aaKnown RBP14.76□□□□□ -0.05
GPC3-202ENST00000394299 POLR3HQ9Y535 204 aaPredicted RBP14.76□□□□□ -0.05
GPC3-202ENST00000394299 A0A1W2PP18 115 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 SLC9A3R1O14745 358 aaPredicted RBP14.75□□□□□ -0.05
GPC3-202ENST00000394299 ANXA5P08758 320 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 NEK2P51955 445 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 NAA20P61599 178 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 NFYCQ13952 458 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 ACOX1Q15067 660 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 GAB4Q2WGN9 574 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 LIPIQ6XZB0 460 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 EFL1Q7Z2Z2 1120 aaKnown RBP14.75□□□□□ -0.05
GPC3-202ENST00000394299 TRIM74Q86UV6 250 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 NPAS3Q8IXF0 933 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 PLPP6Q8IY26 295 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 ULK4Q96C45 1275 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 IGFLR1Q9H665 355 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 ZFP14Q9HCL3 533 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 INTS7Q9NVH2 962 aaKnown RBP14.75□□□□□ -0.05
GPC3-202ENST00000394299 RIMS3Q9UJD0 308 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 YBX2Q9Y2T7 364 aaKnown RBP14.75□□□□□ -0.05
GPC3-202ENST00000394299 RWDD3Q9Y3V2 267 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 PRSS51A0A1B0GVH4 220 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 CCDC154A6NI56 674 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 BBIP1A8MTZ0 92 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 CASQ2O14958 399 aaPredicted RBP14.75□□□□□ -0.05
GPC3-202ENST00000394299 EPB42P16452 691 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 ZNF30P17039 623 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 ATP6V1B2P21281 511 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 RPL38P63173 70 aaKnown RBP14.75□□□□□ -0.05
GPC3-202ENST00000394299 KLC1Q07866 573 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 ABRQ12979 859 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 RCAN2Q14206 197 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 PTGR1Q14914 329 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 TLR1Q15399 786 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 SAMD4BQ5PRF9 694 aaKnown RBP14.75□□□□□ -0.05
GPC3-202ENST00000394299 HENMT1Q5T8I9 393 aaKnown RBP14.75□□□□□ -0.05
GPC3-202ENST00000394299 TECPR1Q7Z6L1 1165 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 ASB11Q8WXH4 323 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 FGF13Q92913 245 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 RDH14Q9HBH5 336 aa14.75□□□□□ -0.05
GPC3-202ENST00000394299 ZNF490Q9ULM2 529 aaPredicted RBP14.75□□□□□ -0.05
GPC3-202ENST00000394299 PRAMEF4O60810 478 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 RB1P06400 928 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 MSH3P20585 1137 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 ITPKAP23677 461 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 PREPP48147 710 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 ADGRE1Q14246 886 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 OGFRL1Q5TC84 451 aaPredicted RBP14.74□□□□□ -0.05
GPC3-202ENST00000394299 PRAMEF9Q5VWM5 478 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 NEK5Q6P3R8 708 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 TMEM154Q6P9G4 183 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 CYP20A1Q6UW02 462 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 ISLR2Q6UXK2 745 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 ETFBKMTQ8IXQ9 262 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 RNF175Q8N4F7 328 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 RASGEF1AQ8N9B8 481 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 LRTOMTQ8WZ04 291 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 LRGUKQ96M69 825 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 SLC8A2Q9UPR5 921 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 A0A1W2PQ67 120 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 ZNF839A8K0R7 811 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 K7ESM1 405 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 SPINT1O43278 529 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 TSPAN6O43657 245 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 RNASEH1O60930 286 aaKnown RBP14.74□□□□□ -0.05
GPC3-202ENST00000394299 ELFN1P0C7U0 828 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 CBSLP0DN79 551 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 TCF3P15923 654 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 CBSP35520 551 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 GRIA3P42263 894 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 ST8SIA6P61647 398 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 GBX1Q14549 363 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 PTCHD3Q3KNS1 767 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 CCSMST1Q4G0I0 132 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 PDCD4Q53EL6 469 aaKnown RBP14.74□□□□□ -0.05
GPC3-202ENST00000394299 GET4Q7L5D6 327 aaPredicted RBP14.74□□□□□ -0.05
GPC3-202ENST00000394299 SPPL2CQ8IUH8 684 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 KIAA2013Q8IYS2 634 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 RGL4Q8IZJ4 473 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 MINDY1Q8N5J2 469 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 ZNF557Q8N988 423 aaPredicted RBP14.74□□□□□ -0.05
GPC3-202ENST00000394299 BPIFB1Q8TDL5 484 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 ASB16Q96NS5 453 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 SLC12A9Q9BXP2 914 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 PARVBQ9HBI1 364 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 SLC22A14Q9Y267 594 aa14.74□□□□□ -0.05
GPC3-202ENST00000394299 HEPACAM2A8MVW5 462 aa14.73□□□□□ -0.05
GPC3-202ENST00000394299 RFXAPO00287 272 aa14.73□□□□□ -0.05
GPC3-202ENST00000394299 ANKRD28O15084 1053 aa14.73□□□□□ -0.05
GPC3-202ENST00000394299 NUAK1O60285 661 aa14.73□□□□□ -0.05
GPC3-202ENST00000394299 ULK1O75385 1050 aa14.73□□□□□ -0.05
GPC3-202ENST00000394299 ZCCHC18P0CG32 403 aa14.73□□□□□ -0.05
GPC3-202ENST00000394299 PBLDP30039 288 aaPredicted RBP14.73□□□□□ -0.05
GPC3-202ENST00000394299 MMP12P39900 470 aa14.73□□□□□ -0.05
GPC3-202ENST00000394299 EMX2Q04743 252 aa14.73□□□□□ -0.05
GPC3-202ENST00000394299 SHHQ15465 462 aa14.73□□□□□ -0.05
GPC3-202ENST00000394299 MAP7D1Q3KQU3 841 aa14.73□□□□□ -0.05
GPC3-202ENST00000394299 FNDC3BQ53EP0 1204 aaKnown RBP14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms