RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 INTS7Q9NVH2 962 aaKnown RBP10.91□□□□□ -0.66
TCOF1-203ENST00000394269 PDE10AQ9Y233 779 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 AP4S1Q9Y587 144 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 GPR45Q9Y5Y3 372 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 NME4O00746 187 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 ZNF197O14709 1029 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 AXIN1O15169 862 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 BCAS2O75934 225 aaPredicted RBP10.91□□□□□ -0.66
TCOF1-203ENST00000394269 PTCHD3Q3KNS1 767 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 LYPLAL1Q5VWZ2 237 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 ISG20Q96AZ6 181 aaKnown RBP10.91□□□□□ -0.66
TCOF1-203ENST00000394269 ECHDC3Q96DC8 303 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 GID8Q9NWU2 228 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 TANC1Q9C0D5 1861 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 NOTCH4Q99466 2003 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 K7EPI3 171 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 MAP3K13O43283 966 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 CYP2A6P11509 494 aaPredicted RBP10.91□□□□□ -0.66
TCOF1-203ENST00000394269 IL12AP29459 219 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 CTSCP53634 463 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 ERVK-8P63133 956 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 MED21Q13503 144 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 GRM2Q14416 872 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 FAM78AQ5JUQ0 283 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 BRAT1Q6PJG6 821 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 BLOC1S3Q6QNY0 202 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 MMAAQ8IVH4 418 aaKnown RBP10.91□□□□□ -0.66
TCOF1-203ENST00000394269 SLC15A3Q8IY34 581 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 C2orf73Q8N5S3 287 aaPredicted RBP10.91□□□□□ -0.66
TCOF1-203ENST00000394269 CELF5Q8N6W0 485 aaKnown RBP10.91□□□□□ -0.66
TCOF1-203ENST00000394269 CANT1Q8WVQ1 401 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 SELENOMQ8WWX9 145 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 ZNF707Q96C28 371 aaPredicted RBP10.91□□□□□ -0.66
TCOF1-203ENST00000394269 SEPHS2Q99611 448 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 P2RY13Q9BPV8 354 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 TMEM79Q9BSE2 394 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 CPEB1Q9BZB8 566 aaKnown RBP10.91□□□□□ -0.66
TCOF1-203ENST00000394269 MTIF3Q9H2K0 278 aaKnown RBP10.91□□□□□ -0.66
TCOF1-203ENST00000394269 DEC1Q9P2X7 70 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 PTBP2Q9UKA9 531 aaKnown RBP10.91□□□□□ -0.66
TCOF1-203ENST00000394269 OARD1Q9Y530 152 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 ZDBF2Q9HCK1 2354 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 ACOT8O14734 319 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 TSPAN6O43657 245 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 PEX1O43933 1283 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 KLK8O60259 260 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 LZTS3O60299 673 aaPredicted RBP10.9□□□□□ -0.66
TCOF1-203ENST00000394269 MMP20O60882 483 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 RPS3P23396 243 aaKnown RBP eCLIP10.9□□□□□ -0.66
TCOF1-203ENST00000394269 MAP4P27816 1152 aaKnown RBP10.9□□□□□ -0.66
TCOF1-203ENST00000394269 ACADVLP49748 655 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 MTPNP58546 118 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 SULT1C3Q6IMI6 304 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 CBARPQ8N350 705 aaPredicted RBP10.9□□□□□ -0.66
TCOF1-203ENST00000394269 FGF13Q92913 245 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 VOPP1Q96AW1 172 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 ASB9Q96DX5 294 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 CNBD2Q96M20 576 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 VCX3BQ9H321 246 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 ELOVL6Q9H5J4 265 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 SCOCQ9UIL1 159 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 NUP214P35658 2090 aaPredicted RBP10.9□□□□□ -0.66
TCOF1-203ENST00000394269 MUC3AQ02505 3323 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 TRBV5-4A0A0C4DH59 114 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 DPPA5A6NC42 116 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 FADS2P1A8MWK0 482 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 SLC9A3R1O14745 358 aaPredicted RBP10.9□□□□□ -0.66
TCOF1-203ENST00000394269 VPS4BO75351 444 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 DDX6P26196 483 aaKnown RBP eCLIP10.9□□□□□ -0.66
TCOF1-203ENST00000394269 TRAF3Q13114 568 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 PRKG2Q13237 762 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 MTX3Q5HYI7 312 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 DOK6Q6PKX4 331 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 TMEM220Q6QAJ8 160 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 CYP20A1Q6UW02 462 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 EFL1Q7Z2Z2 1120 aaKnown RBP10.9□□□□□ -0.66
TCOF1-203ENST00000394269 TRAPPC5Q8IUR0 188 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 RAVER1Q8IY67 606 aaKnown RBP10.9□□□□□ -0.66
TCOF1-203ENST00000394269 KRTCAP2Q8N6L1 136 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 PIP4K2CQ8TBX8 421 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 PROKR1Q8TCW9 393 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 FRS2Q8WU20 508 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 TSSK3Q96PN8 268 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 AIG1Q9NVV5 245 aa10.9□□□□□ -0.66
TCOF1-203ENST00000394269 ADH1CP00326 375 aa10.9□□□□□ -0.67
TCOF1-203ENST00000394269 NELFEP18615 380 aaKnown RBP10.9□□□□□ -0.67
TCOF1-203ENST00000394269 PSMA3P25788 255 aa10.9□□□□□ -0.67
TCOF1-203ENST00000394269 VIPR1P32241 457 aa10.9□□□□□ -0.67
TCOF1-203ENST00000394269 PCBP2Q15366 365 aaKnown RBP eCLIP10.9□□□□□ -0.67
TCOF1-203ENST00000394269 TCEA2Q15560 299 aa10.9□□□□□ -0.67
TCOF1-203ENST00000394269 SF1Q15637 639 aaKnown RBP10.9□□□□□ -0.67
TCOF1-203ENST00000394269 GSTA3Q16772 222 aa10.9□□□□□ -0.67
TCOF1-203ENST00000394269 ZNF805Q5CZA5 627 aa10.9□□□□□ -0.67
TCOF1-203ENST00000394269 ERAP2Q6P179 960 aa10.9□□□□□ -0.67
TCOF1-203ENST00000394269 ANKRD46Q86W74 232 aa10.9□□□□□ -0.67
TCOF1-203ENST00000394269 GPR65Q8IYL9 337 aa10.9□□□□□ -0.67
TCOF1-203ENST00000394269 RGL4Q8IZJ4 473 aa10.9□□□□□ -0.67
TCOF1-203ENST00000394269 MCOLN3Q8TDD5 553 aa10.9□□□□□ -0.67
TCOF1-203ENST00000394269 TMEM159Q96B96 161 aa10.9□□□□□ -0.67
TCOF1-203ENST00000394269 PDLIM5Q96HC4 596 aaKnown RBP10.9□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms