RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 S100A5P33763 92 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 RAB33AQ14088 237 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 PTPRRQ15256 657 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 TIGD2Q4W5G0 525 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 USP43Q70EL4 1123 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 MILR1Q7Z6M3 343 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 CAMK1DQ8IU85 385 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 DCBLD1Q8N8Z6 715 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 ANKFN1Q8N957 763 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 DGCR14Q96DF8 476 aaKnown RBP9.48□□□□□ -0.89
COL6A3-204ENST00000392003 PDLIM5Q96HC4 596 aaKnown RBP9.48□□□□□ -0.89
COL6A3-204ENST00000392003 LRCH3Q96II8 777 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 ZNF597Q96LX8 424 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 UHRF1Q96T88 793 aaPredicted RBP9.48□□□□□ -0.89
COL6A3-204ENST00000392003 CIPCQ9C0C6 399 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.48□□□□□ -0.89
COL6A3-204ENST00000392003 CMTM6Q9NX76 183 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 INSL5Q9Y5Q6 135 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 CPQQ9Y646 472 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 A0A1B0GTL3 188 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 ARHGAP10A1A4S6 786 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 PABPN1LA6NDY0 278 aaKnown RBP9.48□□□□□ -0.89
COL6A3-204ENST00000392003 TSPAN12O95859 305 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 GPIP06744 558 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 CAPN1P07384 714 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 UFM1P61960 85 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 RCAN2Q14206 197 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 CYP51A1Q16850 503 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 C6orf136Q5SQH8 315 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 LCN8Q6JVE9 175 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 OR6K2Q8NGY2 324 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 SLCO4A1Q96BD0 722 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 C9orf16Q9BUW7 83 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 VN1R3Q9BXE9 311 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 ALG2Q9H553 416 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 WWOXQ9NZC7 414 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 A0A0U1RQS6 177 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 CARNS1A5YM72 827 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 ZSCAN5BA6NJL1 495 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 E2F3O00716 465 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 ARPC2O15144 300 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 GUCA1CO95843 209 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 IGSF6O95976 241 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 BMP2P12643 396 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 PCSK6P29122 969 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 GSK3BP49841 420 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 HK3P52790 923 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 NR1H2P55055 460 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 EEFSECP57772 596 aaKnown RBP9.48□□□□□ -0.89
COL6A3-204ENST00000392003 WDR5P61964 334 aaKnown RBP9.48□□□□□ -0.89
COL6A3-204ENST00000392003 LIPEQ05469 1076 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 GTF2H2Q13888 395 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 LRRC26Q2I0M4 334 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 TTLL9Q3SXZ7 439 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 GTF2H2CQ6P1K8 395 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 SNX20Q7Z614 316 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 PATL1Q86TB9 770 aaKnown RBP9.48□□□□□ -0.89
COL6A3-204ENST00000392003 METTL3Q86U44 580 aaKnown RBP9.48□□□□□ -0.89
COL6A3-204ENST00000392003 APOL5Q9BWW9 433 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 GRIP2Q9C0E4 1043 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 EPB41L1Q9H4G0 881 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 ATP13A3Q9H7F0 1226 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 CAAP1Q9H8G2 361 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 C12orf4Q9NQ89 552 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 TMEM45AQ9NWC5 275 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 GMPR2Q9P2T1 348 aaKnown RBP9.48□□□□□ -0.89
COL6A3-204ENST00000392003 MYO7AQ13402 2215 aa9.48□□□□□ -0.89
COL6A3-204ENST00000392003 CHD5Q8TDI0 1954 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 FFAR2O15552 330 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 ZNF254O75437 659 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 EEDO75530 441 aaKnown RBP9.47□□□□□ -0.89
COL6A3-204ENST00000392003 FGF18O76093 207 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 CD160O95971 181 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 TIMP1P01033 207 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 PRR35P0CG20 571 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 CKMT2P17540 419 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 CLK1P49759 484 aaKnown RBP9.47□□□□□ -0.89
COL6A3-204ENST00000392003 CLK3P49761 638 aaKnown RBP9.47□□□□□ -0.89
COL6A3-204ENST00000392003 CLCN7P51798 805 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 CYP4F8P98187 520 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 MYBPC1Q00872 1141 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 PRKCQQ04759 706 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 PCBP2Q15366 365 aaKnown RBP eCLIP9.47□□□□□ -0.89
COL6A3-204ENST00000392003 XKR7Q5GH72 579 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 TPGS1Q6ZTW0 290 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 DDX53Q86TM3 631 aaKnown RBP9.47□□□□□ -0.89
COL6A3-204ENST00000392003 CMTR2Q8IYT2 770 aaKnown RBP9.47□□□□□ -0.89
COL6A3-204ENST00000392003 PACRGLQ8N7B6 248 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 OR52B6Q8NGF0 335 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 ACDQ96AP0 544 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 ULK4Q96C45 1275 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 CDK15Q96Q40 435 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 BRINP2Q9C0B6 783 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 P2RY12Q9H244 342 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 LATS2Q9NRM7 1088 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 PNPLA3Q9NST1 481 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 MYRFQ9Y2G1 1151 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 C7orf72A4D263 438 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 FXYD1O00168 92 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 FZD6O60353 706 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms