RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 TLCD2A6NGC4 264 aa17.87■□□□□ 0.45
CLN3-202ENST00000355477 BHMG1C9JSJ3 638 aaPredicted RBP17.87■□□□□ 0.45
CLN3-202ENST00000355477 LIN7AO14910 233 aaPredicted RBP17.87■□□□□ 0.45
CLN3-202ENST00000355477 TIAF1O95411 115 aa17.87■□□□□ 0.45
CLN3-202ENST00000355477 FTH1P02794 183 aa17.87■□□□□ 0.45
CLN3-202ENST00000355477 OR56A5P0C7T3 313 aa17.87■□□□□ 0.45
CLN3-202ENST00000355477 EBLN1P0CF75 366 aa17.87■□□□□ 0.45
CLN3-202ENST00000355477 FGF5P12034 268 aa17.87■□□□□ 0.45
CLN3-202ENST00000355477 TPSB2P20231 275 aa17.87■□□□□ 0.45
CLN3-202ENST00000355477 MGAT1P26572 445 aa17.87■□□□□ 0.45
CLN3-202ENST00000355477 ACADLP28330 430 aa17.87■□□□□ 0.45
CLN3-202ENST00000355477 TPSAB1Q15661 275 aa17.87■□□□□ 0.45
CLN3-202ENST00000355477 ARMC6Q6NXE6 501 aa17.87■□□□□ 0.45
CLN3-202ENST00000355477 ZNF449Q6P9G9 518 aa17.87■□□□□ 0.45
CLN3-202ENST00000355477 RASGRP3Q8IV61 690 aa17.87■□□□□ 0.45
CLN3-202ENST00000355477 SIDT2Q8NBJ9 832 aaKnown RBP17.87■□□□□ 0.45
CLN3-202ENST00000355477 OR52E1Q8NGJ3 308 aa17.87■□□□□ 0.45
CLN3-202ENST00000355477 COG1Q8WTW3 980 aa17.87■□□□□ 0.45
CLN3-202ENST00000355477 IL22Q9GZX6 179 aa17.87■□□□□ 0.45
CLN3-202ENST00000355477 SRMSQ9H3Y6 488 aa17.87■□□□□ 0.45
CLN3-202ENST00000355477 MVB12BQ9H7P6 319 aa17.87■□□□□ 0.45
CLN3-202ENST00000355477 SYBUQ9NX95 663 aa17.87■□□□□ 0.45
CLN3-202ENST00000355477 BFARQ9NZS9 450 aa17.87■□□□□ 0.45
CLN3-202ENST00000355477 QSOX1O00391 747 aa17.86■□□□□ 0.45
CLN3-202ENST00000355477 BTN3A3O00478 584 aa17.86■□□□□ 0.45
CLN3-202ENST00000355477 CD3EAPO15446 510 aaKnown RBP17.86■□□□□ 0.45
CLN3-202ENST00000355477 AVILO75366 819 aa17.86■□□□□ 0.45
CLN3-202ENST00000355477 SPAG6O75602 509 aa17.86■□□□□ 0.45
CLN3-202ENST00000355477 KIAA0754O94854 1291 aa17.86■□□□□ 0.45
CLN3-202ENST00000355477 KRT14P02533 472 aa17.86■□□□□ 0.45
CLN3-202ENST00000355477 ITGB6P18564 788 aa17.86■□□□□ 0.45
CLN3-202ENST00000355477 CDK16Q00536 496 aa17.86■□□□□ 0.45
CLN3-202ENST00000355477 ABHD18Q0P651 414 aa17.86■□□□□ 0.45
CLN3-202ENST00000355477 GPS1Q13098 491 aa17.86■□□□□ 0.45
CLN3-202ENST00000355477 KCNJ11Q14654 390 aa17.86■□□□□ 0.45
CLN3-202ENST00000355477 LRRC8BQ6P9F7 803 aa17.86■□□□□ 0.45
CLN3-202ENST00000355477 CES3Q6UWW8 571 aa17.86■□□□□ 0.45
CLN3-202ENST00000355477 ZNF843Q8N446 348 aa17.86■□□□□ 0.45
CLN3-202ENST00000355477 D2HGDHQ8N465 521 aa17.86■□□□□ 0.45
CLN3-202ENST00000355477 EXD3Q8N9H8 876 aa17.86■□□□□ 0.45
CLN3-202ENST00000355477 GALNT6Q8NCL4 622 aa17.86■□□□□ 0.45
CLN3-202ENST00000355477 OR5AR1Q8NGP9 310 aa17.86■□□□□ 0.45
CLN3-202ENST00000355477 LKAAEAR1Q8TD35 194 aa17.86■□□□□ 0.45
CLN3-202ENST00000355477 MAGOHBQ96A72 148 aaKnown RBP17.86■□□□□ 0.45
CLN3-202ENST00000355477 TTC1Q99614 292 aa17.86■□□□□ 0.45
CLN3-202ENST00000355477 HGH1Q9BTY7 390 aa17.86■□□□□ 0.45
CLN3-202ENST00000355477 TRIT1Q9H3H1 467 aaKnown RBP17.86■□□□□ 0.45
CLN3-202ENST00000355477 TFB2MQ9H5Q4 396 aaKnown RBP17.86■□□□□ 0.45
CLN3-202ENST00000355477 XKR8Q9H6D3 395 aa17.86■□□□□ 0.45
CLN3-202ENST00000355477 GPN2Q9H9Y4 310 aaPredicted RBP17.86■□□□□ 0.45
CLN3-202ENST00000355477 CATSPERZQ9NTU4 200 aa17.86■□□□□ 0.45
CLN3-202ENST00000355477 TRMT1Q9NXH9 659 aaKnown RBP17.86■□□□□ 0.45
CLN3-202ENST00000355477 IL17BQ9UHF5 180 aa17.86■□□□□ 0.45
CLN3-202ENST00000355477 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.85■□□□□ 0.45
CLN3-202ENST00000355477 IQCF5A8MTL0 148 aa17.85■□□□□ 0.45
CLN3-202ENST00000355477 BTN3A1O00481 513 aa17.85■□□□□ 0.45
CLN3-202ENST00000355477 ZSCAN12O43309 604 aa17.85■□□□□ 0.45
CLN3-202ENST00000355477 TPBGLP0DKB5 382 aa17.85■□□□□ 0.45
CLN3-202ENST00000355477 CCR7P32248 378 aa17.85■□□□□ 0.45
CLN3-202ENST00000355477 COILP38432 576 aaPredicted RBP17.85■□□□□ 0.45
CLN3-202ENST00000355477 STAT5AP42229 794 aa17.85■□□□□ 0.45
CLN3-202ENST00000355477 CSE1LP55060 971 aaKnown RBP17.85■□□□□ 0.45
CLN3-202ENST00000355477 HSD11B2P80365 405 aa17.85■□□□□ 0.45
CLN3-202ENST00000355477 TUBB3Q13509 450 aa17.85■□□□□ 0.45
CLN3-202ENST00000355477 MAP7Q14244 749 aa17.85■□□□□ 0.45
CLN3-202ENST00000355477 TBR1Q16650 682 aa17.85■□□□□ 0.45
CLN3-202ENST00000355477 CYP1B1Q16678 543 aa17.85■□□□□ 0.45
CLN3-202ENST00000355477 LARP7Q4G0J3 582 aaKnown RBP eCLIP17.85■□□□□ 0.45
CLN3-202ENST00000355477 ANKRD22Q5VYY1 191 aa17.85■□□□□ 0.45
CLN3-202ENST00000355477 PWWP2BQ6NUJ5 590 aa17.85■□□□□ 0.45
CLN3-202ENST00000355477 C6orf15Q6UXA7 325 aaPredicted RBP17.85■□□□□ 0.45
CLN3-202ENST00000355477 PPP1R3BQ86XI6 285 aa17.85■□□□□ 0.45
CLN3-202ENST00000355477 KMT5CQ86Y97 462 aa17.85■□□□□ 0.45
CLN3-202ENST00000355477 ESX1Q8N693 406 aa17.85■□□□□ 0.45
CLN3-202ENST00000355477 MFSD3Q96ES6 412 aa17.85■□□□□ 0.45
CLN3-202ENST00000355477 OSBPL9Q96SU4 736 aa17.85■□□□□ 0.45
CLN3-202ENST00000355477 KIFC1Q9BW19 673 aa17.85■□□□□ 0.45
CLN3-202ENST00000355477 FGF21Q9NSA1 209 aa17.85■□□□□ 0.45
CLN3-202ENST00000355477 ANAPC5Q9UJX4 755 aa17.85■□□□□ 0.45
CLN3-202ENST00000355477 POMT2Q9UKY4 750 aa17.85■□□□□ 0.45
CLN3-202ENST00000355477 CDYLQ9Y232 598 aa17.85■□□□□ 0.45
CLN3-202ENST00000355477 NEU2Q9Y3R4 380 aa17.85■□□□□ 0.45
CLN3-202ENST00000355477 SPTA1P02549 2419 aa17.84■□□□□ 0.45
CLN3-202ENST00000355477 GSAPA4D1B5 854 aa17.84■□□□□ 0.45
CLN3-202ENST00000355477 SLC9B1P1A6NJY1 282 aa17.84■□□□□ 0.45
CLN3-202ENST00000355477 AP3B1O00203 1094 aa17.84■□□□□ 0.45
CLN3-202ENST00000355477 ZNF185O15231 689 aa17.84■□□□□ 0.45
CLN3-202ENST00000355477 NKX2-8O15522 239 aa17.84■□□□□ 0.45
CLN3-202ENST00000355477 ZBTB11O95625 1053 aaPredicted RBP17.84■□□□□ 0.45
CLN3-202ENST00000355477 ITGB2P05107 769 aa17.84■□□□□ 0.45
CLN3-202ENST00000355477 F8A1P23610 371 aa17.84■□□□□ 0.45
CLN3-202ENST00000355477 ARNTP27540 789 aa17.84■□□□□ 0.45
CLN3-202ENST00000355477 PRDX3P30048 256 aaKnown RBP17.84■□□□□ 0.45
CLN3-202ENST00000355477 MAGEA6P43360 314 aa17.84■□□□□ 0.45
CLN3-202ENST00000355477 ARL4DP49703 201 aa17.84■□□□□ 0.45
CLN3-202ENST00000355477 C19orf57Q0VDD7 668 aa17.84■□□□□ 0.45
CLN3-202ENST00000355477 PRKAA1Q13131 559 aa17.84■□□□□ 0.45
CLN3-202ENST00000355477 GPR19Q15760 415 aa17.84■□□□□ 0.45
CLN3-202ENST00000355477 CAND1Q86VP6 1230 aaKnown RBP17.84■□□□□ 0.45
CLN3-202ENST00000355477 AMIGO1Q86WK6 493 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms