RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 ESAMQ96AP7 390 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 PGAP3Q96FM1 320 aaPredicted RBP6.68□□□□□ -1.34
VPS39-202ENST00000348544 NEDD4LQ96PU5 975 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 DEPDC7Q96QD5 511 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 HBEGFQ99075 208 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 MYOCQ99972 504 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 TBCDQ9BTW9 1192 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 REXO4Q9GZR2 422 aaKnown RBP6.68□□□□□ -1.34
VPS39-202ENST00000348544 MFSD1Q9H3U5 465 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 ATP13A1Q9HD20 1204 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 MYOZ2Q9NPC6 264 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 CNGB3Q9NQW8 809 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 RBM22Q9NW64 420 aaKnown RBP eCLIP6.68□□□□□ -1.346e-8■■■■■ 33.4
VPS39-202ENST00000348544 C14orf119Q9NWQ9 140 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 PAQR5Q9NXK6 330 aaPredicted RBP6.68□□□□□ -1.34
VPS39-202ENST00000348544 TBC1D24Q9ULP9 559 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 ANGPTL3Q9Y5C1 460 aa6.68□□□□□ -1.34
VPS39-202ENST00000348544 A0A0G2JMP0 313 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 A0A0X1KG70 313 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 EVPLLA8MZ36 301 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 CXCR6O00574 342 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 GSTA4O15217 222 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 MATN3O15232 486 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 FAM20BO75063 409 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 ECI2O75521 394 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 WBP4O75554 376 aaKnown RBP6.67□□□□□ -1.34
VPS39-202ENST00000348544 TXNP10599 105 aaKnown RBP6.67□□□□□ -1.34
VPS39-202ENST00000348544 UROSP10746 265 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 HOXA9P31269 272 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 HOXA11P31270 313 aaPredicted RBP6.67□□□□□ -1.34
VPS39-202ENST00000348544 HTR6P50406 440 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 SERPINH1P50454 418 aaKnown RBP6.67□□□□□ -1.34
VPS39-202ENST00000348544 SUOXP51687 545 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 GPR50Q13585 617 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 IRF3Q14653 427 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 KCTD2Q14681 263 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 MAD2L1BPQ15013 274 aaPredicted RBP6.67□□□□□ -1.34
VPS39-202ENST00000348544 KIAA0040Q15053 153 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 TSNQ15631 228 aaKnown RBP6.67□□□□□ -1.34
VPS39-202ENST00000348544 LRRC26Q2I0M4 334 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 BCL7AQ4VC05 210 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 SETMARQ53H47 684 aaPredicted RBP6.67□□□□□ -1.34
VPS39-202ENST00000348544 CPZQ66K79 652 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 AHSA2Q719I0 299 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 VN1R5Q7Z5H4 357 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 FBXO39Q8N4B4 442 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 SETD9Q8NE22 299 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 APPL2Q8NEU8 664 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 OR8J3Q8NGG0 315 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 FAM162AQ96A26 154 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 CDCA5Q96FF9 252 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 NUSAP1Q9BXS6 441 aaKnown RBP6.67□□□□□ -1.34
VPS39-202ENST00000348544 ITPAQ9BY32 194 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 WDCPQ9H6R7 721 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 ARNT2Q9HBZ2 717 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 TM9SF3Q9HD45 589 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 RASSF1Q9NS23 344 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 SCN3BQ9NY72 215 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 SLC25A37Q9NYZ2 338 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 EHD3Q9NZN3 535 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 PCTPQ9UKL6 214 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 RNF6Q9Y252 685 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 DERAQ9Y315 318 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 MROH6A6NGR9 719 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 NCF1BA6NI72 391 aaPredicted RBP6.67□□□□□ -1.34
VPS39-202ENST00000348544 GOLGA8CPA6NN73 597 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 CENPXA8MT69 81 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 NCF1CA8MVU1 366 aaPredicted RBP6.67□□□□□ -1.34
VPS39-202ENST00000348544 CDC7O00311 574 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 KERAO60938 352 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 OR4F21O95013 312 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 MLYCDO95822 493 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 CD4P01730 458 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 PRSS56P0CW18 603 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 NCF1P14598 390 aaPredicted RBP6.67□□□□□ -1.34
VPS39-202ENST00000348544 DDOSTP39656 456 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 HUNKP57058 714 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 GPLD1P80108 840 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 IL1RL1Q01638 556 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 SOX4Q06945 474 aaPredicted RBP6.67□□□□□ -1.34
VPS39-202ENST00000348544 CYP4F3Q08477 520 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 KEAP1Q14145 624 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 FAM214AQ32MH5 1076 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 RFX4Q33E94 735 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 GTDC1Q4AE62 458 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 ANKS6Q68DC2 871 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 CYP20A1Q6UW02 462 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 ALKAL1Q6UXT8 129 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 NRARPQ7Z6K4 114 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 TAC4Q86UU9 113 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 HS6ST3Q8IZP7 471 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 DEPDC4Q8N2C3 294 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 CADM2Q8N3J6 435 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 PGBD5Q8N414 524 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 ZMIZ2Q8NF64 920 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 APH1BQ8WW43 257 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 TBATAQ96M53 351 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 CDK15Q96Q40 435 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 SMOQ99835 787 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 SIK2Q9H0K1 926 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms