RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 ZNF548Q8NEK5 533 aaPredicted RBP22■■□□□ 1.11
TRIM28-202ENST00000341753 LINGO1Q96FE5 620 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 ZYG11BQ9C0D3 744 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 INTS6Q9UL03 887 aaKnown RBP22■■□□□ 1.11
TRIM28-202ENST00000341753 ARVCFO00192 962 aa21.99■■□□□ 1.11
TRIM28-202ENST00000341753 FADS2O95864 444 aaKnown RBP21.99■■□□□ 1.11
TRIM28-202ENST00000341753 ASGR1P07306 291 aa21.99■■□□□ 1.11
TRIM28-202ENST00000341753 PTPRRQ15256 657 aa21.99■■□□□ 1.11
TRIM28-202ENST00000341753 BCL2A1Q16548 175 aa21.99■■□□□ 1.11
TRIM28-202ENST00000341753 PHKG1Q16816 387 aa21.99■■□□□ 1.11
TRIM28-202ENST00000341753 MS4A13Q5J8X5 152 aa21.99■■□□□ 1.11
TRIM28-202ENST00000341753 PAGE2Q7Z2X7 111 aa21.99■■□□□ 1.11
TRIM28-202ENST00000341753 VMP1Q96GC9 406 aa21.99■■□□□ 1.11
TRIM28-202ENST00000341753 EPS8L2Q9H6S3 715 aa21.99■■□□□ 1.11
TRIM28-202ENST00000341753 IQCF5A8MTL0 148 aa21.99■■□□□ 1.11
TRIM28-202ENST00000341753 GPR182O15218 404 aa21.99■■□□□ 1.11
TRIM28-202ENST00000341753 CYP4F3Q08477 520 aa21.99■■□□□ 1.11
TRIM28-202ENST00000341753 VAC14Q08AM6 782 aa21.99■■□□□ 1.11
TRIM28-202ENST00000341753 SMN1Q16637 294 aaKnown RBP21.99■■□□□ 1.11
TRIM28-202ENST00000341753 GCNT7Q6ZNI0 430 aa21.99■■□□□ 1.11
TRIM28-202ENST00000341753 EFL1Q7Z2Z2 1120 aaKnown RBP21.99■■□□□ 1.11
TRIM28-202ENST00000341753 METTL23Q86XA0 190 aa21.99■■□□□ 1.11
TRIM28-202ENST00000341753 Q8N9G6 341 aaPredicted RBP21.99■■□□□ 1.11
TRIM28-202ENST00000341753 BRSK1Q8TDC3 778 aa21.99■■□□□ 1.11
TRIM28-202ENST00000341753 GPR152Q8TDT2 470 aa21.99■■□□□ 1.11
TRIM28-202ENST00000341753 S100ZQ8WXG8 99 aa21.99■■□□□ 1.11
TRIM28-202ENST00000341753 RHBDF1Q96CC6 855 aa21.99■■□□□ 1.11
TRIM28-202ENST00000341753 MYOCQ99972 504 aa21.99■■□□□ 1.11
TRIM28-202ENST00000341753 RMI1Q9H9A7 625 aa21.99■■□□□ 1.11
TRIM28-202ENST00000341753 SLCO3A1Q9UIG8 710 aa21.99■■□□□ 1.11
TRIM28-202ENST00000341753 TMEFF2Q9UIK5 374 aaPredicted RBP21.99■■□□□ 1.11
TRIM28-202ENST00000341753 LAMA2P24043 3122 aaKnown RBP21.98■■□□□ 1.11
TRIM28-202ENST00000341753 CXCR6O00574 342 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 GPR39O43194 453 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 NPPAP01160 153 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 IGHA2P01877 340 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 MAGP20916 626 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 CD6P30203 668 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 HTR7P34969 479 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 MRPL19P49406 292 aaKnown RBP21.98■■□□□ 1.11
TRIM28-202ENST00000341753 RPL38P63173 70 aaKnown RBP21.98■■□□□ 1.11
TRIM28-202ENST00000341753 ABRAXAS2Q15018 415 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 TRIP4Q15650 581 aaPredicted RBP21.98■■□□□ 1.11
TRIM28-202ENST00000341753 NPTX1Q15818 432 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 DGUOKQ16854 277 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 FAM174BQ3ZCQ3 159 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 DCP2Q8IU60 420 aaKnown RBP21.98■■□□□ 1.11
TRIM28-202ENST00000341753 OR6Q1Q8NGQ2 317 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 EXOC2Q96KP1 924 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 ACBD6Q9BR61 282 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 ZBED2Q9BTP6 218 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 RIBC2Q9H4K1 309 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 ABCB10Q9NRK6 738 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 VNN3Q9NY84 501 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 C3orf18Q9UK00 162 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 SCN10AQ9Y5Y9 1956 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 CYBAP13498 195 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 SLC2A4P14672 509 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 OGNP20774 298 aaKnown RBP21.98■■□□□ 1.11
TRIM28-202ENST00000341753 CAP1Q01518 475 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 TYSND1Q2T9J0 566 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 PRR23BQ6ZRT6 265 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 B3GNT8Q7Z7M8 397 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 MIB1Q86YT6 1006 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 PIANPQ8IYJ0 282 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 EID3Q8N140 333 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 C10orf111Q8N326 155 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 MYEOVQ96EZ4 313 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 RDH12Q96NR8 316 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 MIR1-1HGQ9H1L0 117 aa21.98■■□□□ 1.11
TRIM28-202ENST00000341753 PRDM5Q9NQX1 630 aaPredicted RBP21.98■■□□□ 1.11
TRIM28-202ENST00000341753 STX16O14662 325 aa21.97■■□□□ 1.11
TRIM28-202ENST00000341753 ANKRD28O15084 1053 aa21.97■■□□□ 1.11
TRIM28-202ENST00000341753 LSM1O15116 133 aaKnown RBP21.97■■□□□ 1.11
TRIM28-202ENST00000341753 TSPAN12O95859 305 aa21.97■■□□□ 1.11
TRIM28-202ENST00000341753 RHOQP17081 205 aa21.97■■□□□ 1.11
TRIM28-202ENST00000341753 RPL9P32969 192 aaKnown RBP21.97■■□□□ 1.11
TRIM28-202ENST00000341753 EFEMP1Q12805 493 aa21.97■■□□□ 1.11
TRIM28-202ENST00000341753 ZNF235Q14590 738 aa21.97■■□□□ 1.11
TRIM28-202ENST00000341753 SF3B4Q15427 424 aaKnown RBP eCLIP21.97■■□□□ 1.115e-9■■■■□ 19.7
TRIM28-202ENST00000341753 SAPCD2Q86UD0 394 aa21.97■■□□□ 1.11
TRIM28-202ENST00000341753 P2RY8Q86VZ1 359 aa21.97■■□□□ 1.11
TRIM28-202ENST00000341753 ARL10Q8N8L6 244 aa21.97■■□□□ 1.11
TRIM28-202ENST00000341753 CLHC1Q8NHS4 586 aa21.97■■□□□ 1.11
TRIM28-202ENST00000341753 SOCS4Q8WXH5 440 aa21.97■■□□□ 1.11
TRIM28-202ENST00000341753 PKMYT1Q99640 499 aa21.97■■□□□ 1.11
TRIM28-202ENST00000341753 ZFP14Q9HCL3 533 aa21.97■■□□□ 1.11
TRIM28-202ENST00000341753 HEBP1Q9NRV9 189 aa21.97■■□□□ 1.11
TRIM28-202ENST00000341753 SLC6A13Q9NSD5 602 aa21.97■■□□□ 1.11
TRIM28-202ENST00000341753 SLC25A37Q9NYZ2 338 aa21.97■■□□□ 1.11
TRIM28-202ENST00000341753 PCDHGA10Q9Y5H3 936 aa21.97■■□□□ 1.11
TRIM28-202ENST00000341753 FFAR3O14843 346 aa21.97■■□□□ 1.11
TRIM28-202ENST00000341753 PFDN6O15212 129 aa21.97■■□□□ 1.11
TRIM28-202ENST00000341753 GPR42O15529 346 aa21.97■■□□□ 1.11
TRIM28-202ENST00000341753 FGF1P05230 155 aa21.97■■□□□ 1.11
TRIM28-202ENST00000341753 ALOX5P09917 674 aa21.97■■□□□ 1.11
TRIM28-202ENST00000341753 HOXB8P17481 243 aaPredicted RBP21.97■■□□□ 1.11
TRIM28-202ENST00000341753 GJA8P48165 433 aa21.97■■□□□ 1.11
TRIM28-202ENST00000341753 MASP1P48740 699 aa21.97■■□□□ 1.11
TRIM28-202ENST00000341753 TOP3AQ13472 1001 aaPredicted RBP21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms