RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 KLK10O43240 276 aa15.4■□□□□ 0.06
CLN3-201ENST00000333496 NDUFS1P28331 727 aa15.4■□□□□ 0.06
CLN3-201ENST00000333496 TSPAN7P41732 249 aa15.4■□□□□ 0.06
CLN3-201ENST00000333496 DR1Q01658 176 aa15.4■□□□□ 0.06
CLN3-201ENST00000333496 CLN3Q13286 438 aa15.4■□□□□ 0.06
CLN3-201ENST00000333496 DHX34Q14147 1143 aaKnown RBP15.4■□□□□ 0.06
CLN3-201ENST00000333496 CTSL3PQ5NE16 218 aa15.4■□□□□ 0.06
CLN3-201ENST00000333496 IZUMO3Q5VZ72 239 aa15.4■□□□□ 0.06
CLN3-201ENST00000333496 IRGCQ6NXR0 463 aa15.4■□□□□ 0.06
CLN3-201ENST00000333496 VRK3Q8IV63 474 aa15.4■□□□□ 0.06
CLN3-201ENST00000333496 ACVR1CQ8NER5 493 aa15.4■□□□□ 0.06
CLN3-201ENST00000333496 BIRC8Q96P09 236 aa15.4■□□□□ 0.06
CLN3-201ENST00000333496 TRIM51Q9BSJ1 452 aa15.4■□□□□ 0.06
CLN3-201ENST00000333496 DPH1Q9BZG8 443 aa15.4■□□□□ 0.06
CLN3-201ENST00000333496 ZNF768Q9H5H4 540 aaKnown RBP15.4■□□□□ 0.06
CLN3-201ENST00000333496 APMAPQ9HDC9 416 aa15.4■□□□□ 0.06
CLN3-201ENST00000333496 HRASLS2Q9NWW9 162 aa15.4■□□□□ 0.06
CLN3-201ENST00000333496 SIDT1Q9NXL6 827 aaKnown RBP15.4■□□□□ 0.06
CLN3-201ENST00000333496 SLC39A1Q9NY26 324 aa15.4■□□□□ 0.06
CLN3-201ENST00000333496 SEMA5BQ9P283 1151 aa15.4■□□□□ 0.06
CLN3-201ENST00000333496 CDC23Q9UJX2 597 aa15.4■□□□□ 0.06
CLN3-201ENST00000333496 PCDHGA3Q9Y5H0 932 aa15.4■□□□□ 0.06
CLN3-201ENST00000333496 GPC4O75487 556 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 NDUFS3O75489 264 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 BANF1O75531 89 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 RPS3P23396 243 aaKnown RBP eCLIP15.39■□□□□ 0.054e-6■■□□□ 12.9
CLN3-201ENST00000333496 SEPHS1P49903 392 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 CSE1LP55060 971 aaKnown RBP15.39■□□□□ 0.05
CLN3-201ENST00000333496 MC2RQ01718 297 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 KRT33BQ14525 404 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 TGIF1Q15583 401 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 MSS51Q4VC12 460 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 CACHD1Q5VU97 1274 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 ANKS6Q68DC2 871 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 MRNIPQ6NTE8 343 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 ZNF449Q6P9G9 518 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 SYDE1Q6ZW31 735 aaPredicted RBP15.39■□□□□ 0.05
CLN3-201ENST00000333496 CENPUQ71F23 418 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 PRSS42Q7Z5A4 293 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 PCGF5Q86SE9 256 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 HOOK3Q86VS8 718 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 ZFAND4Q86XD8 727 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 OTUD6BQ8N6M0 293 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 MNS1Q8NEH6 495 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 OR4E2Q8NGC2 313 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 OR52E1Q8NGJ3 308 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 OR5AR1Q8NGP9 310 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 KLHL6Q8WZ60 621 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 LPGAT1Q92604 370 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 ZDHHC12Q96GR4 267 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 RUNDC3BQ96NL0 473 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 MVB12BQ9H7P6 319 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 MAD1L1Q9Y6D9 718 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 IGHV5-51A0A0C4DH38 117 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 UBA6A0AVT1 1052 aaPredicted RBP15.39■□□□□ 0.05
CLN3-201ENST00000333496 OR6C74A6NCV1 312 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 EFCAB8A8MWE9 144 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 TP73O15350 636 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 RASSF9O75901 435 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 USP1O94782 785 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 F7P08709 466 aaPredicted RBP15.39■□□□□ 0.05
CLN3-201ENST00000333496 PAMP19021 973 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 OGNP20774 298 aaKnown RBP15.39■□□□□ 0.05
CLN3-201ENST00000333496 AOAHP28039 575 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 PLOD1Q02809 727 aaPredicted RBP15.39■□□□□ 0.05
CLN3-201ENST00000333496 HSPA14Q0VDF9 509 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 PRKG2Q13237 762 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 ZNF789Q5FWF6 425 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 TMEM164Q5U3C3 297 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 NEPROQ6NW34 567 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 KLHL35Q6PF15 583 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 SDCCAG8Q86SQ7 713 aaPredicted RBP15.39■□□□□ 0.05
CLN3-201ENST00000333496 DTX1Q86Y01 620 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 CILP2Q8IUL8 1156 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 SLC22A15Q8IZD6 547 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 TCF12Q99081 682 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 KRT12Q99456 494 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 MAP3K3Q99759 626 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 CTRCQ99895 268 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 HGH1Q9BTY7 390 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 DDA1Q9BW61 102 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 TFB2MQ9H5Q4 396 aaKnown RBP15.39■□□□□ 0.05
CLN3-201ENST00000333496 FBXO8Q9NRD0 319 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 ARGLU1Q9NWB6 273 aaPredicted RBP15.39■□□□□ 0.05
CLN3-201ENST00000333496 RALYQ9UKM9 306 aaKnown RBP15.39■□□□□ 0.05
CLN3-201ENST00000333496 LHX6Q9UPM6 363 aa15.39■□□□□ 0.05
CLN3-201ENST00000333496 SPTBP11277 2137 aa15.38■□□□□ 0.05
CLN3-201ENST00000333496 F8W8V4 182 aa15.38■□□□□ 0.05
CLN3-201ENST00000333496 TPBGLP0DKB5 382 aa15.38■□□□□ 0.05
CLN3-201ENST00000333496 EIF3BP55884 814 aaKnown RBP15.38■□□□□ 0.05
CLN3-201ENST00000333496 SH3BP2P78314 561 aa15.38■□□□□ 0.05
CLN3-201ENST00000333496 DHX9Q08211 1270 aaKnown RBP15.38■□□□□ 0.05
CLN3-201ENST00000333496 NAA30Q147X3 362 aaPredicted RBP15.38■□□□□ 0.05
CLN3-201ENST00000333496 SYTL3Q4VX76 610 aa15.38■□□□□ 0.05
CLN3-201ENST00000333496 PTRHD1Q6GMV3 140 aaKnown RBP15.38■□□□□ 0.05
CLN3-201ENST00000333496 OOSP2Q86WS3 158 aa15.38■□□□□ 0.05
CLN3-201ENST00000333496 LRRC6Q86X45 466 aa15.38■□□□□ 0.05
CLN3-201ENST00000333496 UNC5BQ8IZJ1 945 aa15.38■□□□□ 0.05
CLN3-201ENST00000333496 ASZ1Q8WWH4 475 aa15.38■□□□□ 0.05
CLN3-201ENST00000333496 LCN9Q8WX39 176 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms