RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 HTR3AP46098 478 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 CRISP3P54108 245 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 ZFP69Q49AA0 526 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 NEK5Q6P3R8 708 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 LINC00299Q6ZSB3 139 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 Q6ZSR9 355 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 PLPPR4Q7Z2D5 763 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 ZFAND4Q86XD8 727 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 GRAMD2AQ8IUY3 354 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 EID3Q8N140 333 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 FBXO39Q8N4B4 442 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 UGT2B28Q9BY64 529 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 MPP6Q9NZW5 540 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 A0A0G2JMZ2 1700 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 LRRC37A2A6NM11 1700 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 TFECO14948 347 aaPredicted RBP13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 ZW10O43264 779 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 RGS10O43665 173 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 HBP1O60381 514 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 CRYZL1O95825 349 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 POLR2EP19388 210 aaKnown RBP13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 IGFBP5P24593 272 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 RYKP34925 604 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 SLC26A2P50443 739 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 GEMP55040 296 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 NFKB2Q00653 900 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 GTF2H3Q13889 308 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 FAM187BQ17R55 369 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 CARD16Q5EG05 197 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 Q6ZPB1 254 aaPredicted RBP13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 SPATA19Q7Z5L4 167 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 NRARPQ7Z6K4 114 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 GALNT10Q86SR1 603 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 BEST2Q8NFU1 509 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 OR52B6Q8NGF0 335 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 NTAN1Q96AB6 310 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 EGLN2Q96KS0 407 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 NECTIN4Q96NY8 510 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 RNF39Q9H2S5 420 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 EHD3Q9NZN3 535 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 RNF112Q9ULX5 631 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 MYO1GB0I1T2 1018 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 MEN1O00255 615 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 PSMD3O43242 534 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 TMCC2O75069 709 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 DNAJB5O75953 348 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 PTTG1O95997 202 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 KRT20P35900 424 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 CD86P42081 329 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 DAOAP59103 153 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 IRF3Q14653 427 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 CDK10Q15131 360 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 PON2Q15165 354 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 ZBTB6Q15916 424 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 SLX4IPQ5VYV7 408 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 PAQR3Q6TCH7 311 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 GCNT7Q6ZNI0 430 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 NETO1Q8TDF5 533 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 HCAR2Q8TDS4 363 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 ST6GAL2Q96JF0 529 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 ZNF599Q96NL3 588 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 RDH12Q96NR8 316 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 SLC6A13Q9NSD5 602 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 USE1Q9NZ43 259 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 TPRKBQ9Y3C4 175 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 ARIH1Q9Y4X5 557 aaPredicted RBP13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 PCDHGB6Q9Y5F9 930 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 HAT1O14929 419 aa13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 ECI2O75521 394 aa13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 RECQL4O94761 1208 aa13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 SEMA3DO95025 777 aa13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 ZNF286BP0CG31 522 aa13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 HCAR3P49019 387 aa13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 DAPP51397 102 aa13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 CHRNEQ04844 493 aa13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 SCAPQ12770 1279 aa13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 PTGR1Q14914 329 aa13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 C18orf21Q32NC0 220 aaPredicted RBP13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 SPATS1Q496A3 300 aa13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 ZNF484Q5JVG2 852 aa13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 WSCD1Q658N2 575 aa13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 CCDC71Q8IV32 467 aaPredicted RBP13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 CHPFQ8IZ52 775 aa13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 TCAIMQ8N3R3 496 aa13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 OR5K1Q8NHB7 308 aa13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 BRINP2Q9C0B6 783 aa13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 OR51E2Q9H255 320 aa13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 MMP27Q9H306 513 aa13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 NT5MQ9NPB1 228 aa13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 GIMAP4Q9NUV9 329 aa13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 SCN3BQ9NY72 215 aa13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 GMPPBQ9Y5P6 360 aa13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 SNX8Q9Y5X2 465 aa13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 MAU2Q9Y6X3 613 aa13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 TTC3P53804 2025 aa13.21□□□□□ -0.29
CCDC88C-201ENST00000331194 TYW5A2RUC4 315 aaKnown RBP13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 CENPXA8MT69 81 aa13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 M0R082 166 aa13.21□□□□□ -0.3
CCDC88C-201ENST00000331194 SOCS7O14512 581 aa13.21□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms