RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 MAF1Q9H063 256 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 DAPL1A0PJW8 107 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 C22orf31O95567 290 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 FGF19O95750 216 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 PTTG1O95997 202 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 IL7P13232 177 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 ADH6P28332 368 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 MIIPQ5JXC2 388 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 COLEC12Q5KU26 742 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 DRICH1Q6PGQ1 229 aaPredicted RBP14.07□□□□□ -0.16
COL7A1-201ENST00000328333 ELMOD2Q8IZ81 293 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 KLHL6Q8WZ60 621 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 CNPPD1Q9BV87 410 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 ZDHHC6Q9H6R6 413 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 AGLP35573 1532 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 ARHGEF17Q96PE2 2063 aaPredicted RBP14.07□□□□□ -0.16
COL7A1-201ENST00000328333 NUP54Q7Z3B4 507 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 SLC37A3Q8NCC5 494 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 ELMO3Q96BJ8 720 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 GDAP2Q9NXN4 497 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 SLC17A7Q9P2U7 560 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 COLEC10Q9Y6Z7 277 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 ATRNO75882 1429 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 PARP4Q9UKK3 1724 aaKnown RBP14.07□□□□□ -0.16
COL7A1-201ENST00000328333 FBP2O00757 339 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 XKP51811 444 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 HERVK_113P63132 956 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 BPIFB1Q8TDL5 484 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 OSTF1Q92882 214 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 OTUB2Q96DC9 234 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 CXorf40BQ96DE9 158 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 ERVK-6Q9BXR3 956 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 HHATLQ9HCP6 504 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 TLR6Q9Y2C9 796 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 USP20Q9Y2K6 914 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 DISC1C4P0D8 188 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 C8GP07360 202 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 NRIP1P48552 1158 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 AIMP2Q13155 320 aaKnown RBP14.07□□□□□ -0.16
COL7A1-201ENST00000328333 SEC23AQ15436 765 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 LSM14AQ8ND56 463 aaKnown RBP14.07□□□□□ -0.16
COL7A1-201ENST00000328333 CPB2Q96IY4 423 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 TSNAXQ99598 290 aaKnown RBP14.07□□□□□ -0.16
COL7A1-201ENST00000328333 TNKS2Q9H2K2 1166 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 GTF2IRD1Q9UHL9 959 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 H3BM21 787 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 DNM1LO00429 736 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 HOXD8P13378 290 aaPredicted RBP14.07□□□□□ -0.16
COL7A1-201ENST00000328333 CXCR3P49682 368 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 CLCN3P51790 818 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 GRK1Q15835 563 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 MAPK14Q16539 360 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 REPS2Q8NFH8 660 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 MYO19Q96H55 970 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 BTRCQ9Y297 605 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 LRRN3E7EW58 273 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 H3BRB1 525 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 IFNA1P01562 189 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 OTOP1Q7RTM1 612 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 FEM1AQ9BSK4 669 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 LRRN3Q9H3W5 708 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 TUT1Q9H6E5 874 aaKnown RBP14.06□□□□□ -0.16
COL7A1-201ENST00000328333 KLF11O14901 512 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 ABCB7O75027 752 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 ACVR2AP27037 513 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 CDH13P55290 713 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 DSG2Q14126 1118 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 SPIN4Q56A73 249 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 FAM183BPQ6ZVS7 135 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 SEMA3CQ99985 751 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 RUVBL1Q9Y265 456 aaKnown RBP14.06□□□□□ -0.16
COL7A1-201ENST00000328333 ALDH2P05091 517 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 HSD17B2P37059 387 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 PDSS2Q86YH6 399 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 ZNF527Q8NB42 609 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 SLC13A3Q8WWT9 602 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 CADM1Q9BY67 442 aaKnown RBP14.06□□□□□ -0.16
COL7A1-201ENST00000328333 EXO5Q9H790 373 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 QTRT2Q9H974 415 aaKnown RBP14.06□□□□□ -0.16
COL7A1-201ENST00000328333 ZFP57Q9NU63 452 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 ADGRB1O14514 1584 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 ATP6AP2A0A1C7CYW4 349 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 EEFSECP57772 596 aaKnown RBP14.06□□□□□ -0.16
COL7A1-201ENST00000328333 GTF2H2Q13888 395 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 FAM174BQ3ZCQ3 159 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 GTF2H2CQ6P1K8 395 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 PARP8Q8N3A8 854 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 ANKFN1Q8N957 763 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 ZNF701M0R085 212 aaPredicted RBP14.06□□□□□ -0.16
COL7A1-201ENST00000328333 PPM1BO75688 479 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 GTF2BQ00403 316 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 ASB18Q6ZVZ8 466 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 CIR1Q86X95 450 aaPredicted RBP14.06□□□□□ -0.16
COL7A1-201ENST00000328333 ISOC1Q96CN7 298 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 FUZQ9BT04 418 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 FBXO10Q9UK96 956 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 GRIN2DO15399 1336 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 RGL2O15211 777 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 FAM86B2P0C5J1 330 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 ERVK-8P63133 956 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms