RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 LMAN1P49257 510 aa12.4□□□□□ -0.42
CD44-203ENST00000278386 CCL11P51671 97 aa12.4□□□□□ -0.42
CD44-203ENST00000278386 SRSF1Q07955 248 aaKnown RBP eCLIP12.4□□□□□ -0.42
CD44-203ENST00000278386 AADACL2Q6P093 401 aa12.4□□□□□ -0.42
CD44-203ENST00000278386 MICALCLQ6ZW33 695 aa12.4□□□□□ -0.42
CD44-203ENST00000278386 TAS2R42Q7RTR8 314 aa12.4□□□□□ -0.42
CD44-203ENST00000278386 HOOK3Q86VS8 718 aa12.4□□□□□ -0.42
CD44-203ENST00000278386 SERPINA9Q86WD7 417 aa12.4□□□□□ -0.42
CD44-203ENST00000278386 DSELQ8IZU8 1212 aa12.4□□□□□ -0.42
CD44-203ENST00000278386 FAM26EQ8N5C1 309 aa12.4□□□□□ -0.42
CD44-203ENST00000278386 ENDOVQ8N8Q3 282 aaKnown RBP12.4□□□□□ -0.42
CD44-203ENST00000278386 ACTR5Q9H9F9 607 aaPredicted RBP12.4□□□□□ -0.42
CD44-203ENST00000278386 FEZ2Q9UHY8 353 aaPredicted RBP12.4□□□□□ -0.42
CD44-203ENST00000278386 EFR3BQ9Y2G0 817 aa12.4□□□□□ -0.42
CD44-203ENST00000278386 NUP210LQ5VU65 1888 aa12.4□□□□□ -0.42
CD44-203ENST00000278386 FLNCQ14315 2725 aa12.39□□□□□ -0.43
CD44-203ENST00000278386 GOLGA6L9A6NEM1 432 aa12.39□□□□□ -0.43
CD44-203ENST00000278386 TTLL8A6PVC2 850 aa12.39□□□□□ -0.43
CD44-203ENST00000278386 AGAP14A8MT82 685 aa12.39□□□□□ -0.43
CD44-203ENST00000278386 MEN1O00255 615 aa12.39□□□□□ -0.43
CD44-203ENST00000278386 ZNF189O75820 626 aaPredicted RBP12.39□□□□□ -0.43
CD44-203ENST00000278386 PRSS56P0CW18 603 aa12.39□□□□□ -0.43
CD44-203ENST00000278386 ST6GAL1P15907 406 aa12.39□□□□□ -0.43
CD44-203ENST00000278386 PREPP48147 710 aa12.39□□□□□ -0.43
CD44-203ENST00000278386 CDKN1CP49918 316 aaPredicted RBP12.39□□□□□ -0.43
CD44-203ENST00000278386 POU6F1Q14863 301 aa12.39□□□□□ -0.43
CD44-203ENST00000278386 GPR33Q49SQ1 333 aa12.39□□□□□ -0.43
CD44-203ENST00000278386 IZUMO3Q5VZ72 239 aa12.39□□□□□ -0.43
CD44-203ENST00000278386 SYTL1Q8IYJ3 562 aa12.39□□□□□ -0.43
CD44-203ENST00000278386 SLC38A9Q8NBW4 561 aa12.39□□□□□ -0.43
CD44-203ENST00000278386 OR52E1Q8NGJ3 308 aa12.39□□□□□ -0.43
CD44-203ENST00000278386 OR1L3Q8NH93 324 aa12.39□□□□□ -0.43
CD44-203ENST00000278386 N4BP2L2Q92802 583 aaPredicted RBP12.39□□□□□ -0.43
CD44-203ENST00000278386 CALR3Q96L12 384 aaKnown RBP12.39□□□□□ -0.43
CD44-203ENST00000278386 LRFN5Q96NI6 719 aa12.39□□□□□ -0.43
CD44-203ENST00000278386 ALS2CR12Q96Q35 445 aa12.39□□□□□ -0.43
CD44-203ENST00000278386 KLHL25Q9H0H3 589 aa12.39□□□□□ -0.43
CD44-203ENST00000278386 ING2Q9H160 280 aa12.39□□□□□ -0.43
CD44-203ENST00000278386 OR52A5Q9H2C5 316 aa12.39□□□□□ -0.43
CD44-203ENST00000278386 XKR8Q9H6D3 395 aa12.39□□□□□ -0.43
CD44-203ENST00000278386 G3BP2Q9UN86 482 aaKnown RBP12.39□□□□□ -0.43
CD44-203ENST00000278386 NBPF19A0A087WUL8 3843 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 SHANK1Q9Y566 2161 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 C17orf113A0A1B0GUU1 675 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 CCDC78A2IDD5 438 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 RCCD1A6NED2 376 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 C2orf74A8MZ97 194 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 C9J4A7 227 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 BTN3A3O00478 584 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 LDB2O43679 373 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 VPS4BO75351 444 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 RAB40ALP0C0E4 278 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 ATXN8OSP0DMR3 200 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 PVRP15151 417 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 PDHA2P29803 388 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 PRDX3P30048 256 aaKnown RBP12.38□□□□□ -0.43
CD44-203ENST00000278386 CD97P48960 835 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 ITGA1P56199 1179 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 PRKG2Q13237 762 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 LAMB3Q13751 1172 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 PTCHD3Q3KNS1 767 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 SYTL3Q4VX76 610 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 PLEKHS1Q5SXH7 462 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 DENND5AQ6IQ26 1287 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 LCN10Q6JVE6 187 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 FAM198BQ6UWH4 519 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 KIAA1328Q86T90 577 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 AMIGO1Q86WK6 493 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 TAB3Q8N5C8 712 aaPredicted RBP12.38□□□□□ -0.43
CD44-203ENST00000278386 PHC3Q8NDX5 983 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 ACRBPQ8NEB7 543 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 CPT1CQ8TCG5 803 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 ALG3Q92685 438 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 NRTNQ99748 197 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 MVB12BQ9H7P6 319 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 LRRC40Q9H9A6 602 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 SYTL2Q9HCH5 934 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 PCMTD2Q9NV79 361 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 NLE1Q9NVX2 485 aaPredicted RBP12.38□□□□□ -0.43
CD44-203ENST00000278386 PIH1D1Q9NWS0 290 aaKnown RBP12.38□□□□□ -0.43
CD44-203ENST00000278386 ACTR10Q9NZ32 417 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 SMARCAL1Q9NZC9 954 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 TCFL5Q9UL49 500 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 VPS4AQ9UN37 437 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 PCDHGA9Q9Y5G4 932 aaKnown RBP12.38□□□□□ -0.43
CD44-203ENST00000278386 EPN1Q9Y6I3 576 aaPredicted RBP12.38□□□□□ -0.43
CD44-203ENST00000278386 DUSP10Q9Y6W6 482 aa12.38□□□□□ -0.43
CD44-203ENST00000278386 LRRK2Q5S007 2527 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 IGLV3-16A0A075B6K0 115 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 TRBV5-4A0A0C4DH59 114 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 GRID2IPA4D2P6 1211 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 E7EQ34 232 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 TMEM63AO94886 807 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 GP1BBP13224 206 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 TPH1P17752 444 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 RORAP35398 523 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 UQCRFS1P47985 274 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 CD151P48509 253 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 CACNG1Q06432 222 aa12.37□□□□□ -0.43
CD44-203ENST00000278386 RPA4Q13156 261 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms