RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 GOLPH3LQ9H4A5 285 aa4.2□□□□□ -1.74
CCDC54-201ENST00000261058 NOL11Q9H8H0 719 aaKnown RBP4.2□□□□□ -1.74
CCDC54-201ENST00000261058 TRPC7Q9HCX4 862 aa4.2□□□□□ -1.74
CCDC54-201ENST00000261058 PIH1D3Q9NQM4 214 aaKnown RBP4.2□□□□□ -1.74
CCDC54-201ENST00000261058 CCDC177Q9NQR7 707 aaPredicted RBP4.2□□□□□ -1.74
CCDC54-201ENST00000261058 ABCF3Q9NUQ8 709 aa4.2□□□□□ -1.74
CCDC54-201ENST00000261058 MIOSQ9NXC5 875 aa4.2□□□□□ -1.74
CCDC54-201ENST00000261058 GRIP1Q9Y3R0 1128 aa4.2□□□□□ -1.74
CCDC54-201ENST00000261058 ELOVL7A1L3X0 281 aa4.19□□□□□ -1.74
CCDC54-201ENST00000261058 XRCC3O43542 346 aa4.19□□□□□ -1.74
CCDC54-201ENST00000261058 HMMRO75330 724 aa4.19□□□□□ -1.74
CCDC54-201ENST00000261058 KRT36O76013 467 aa4.19□□□□□ -1.74
CCDC54-201ENST00000261058 TRUB2O95900 331 aaKnown RBP4.19□□□□□ -1.74
CCDC54-201ENST00000261058 NR1D1P20393 614 aa4.19□□□□□ -1.74
CCDC54-201ENST00000261058 CPT2P23786 658 aa4.19□□□□□ -1.74
CCDC54-201ENST00000261058 EEF1DP29692 281 aaKnown RBP4.19□□□□□ -1.74
CCDC54-201ENST00000261058 GABRA5P31644 462 aa4.19□□□□□ -1.74
CCDC54-201ENST00000261058 HOXA1P49639 335 aaPredicted RBP4.19□□□□□ -1.74
CCDC54-201ENST00000261058 GAS1P54826 345 aa4.19□□□□□ -1.74
CCDC54-201ENST00000261058 DUOXA1Q1HG43 343 aa4.19□□□□□ -1.74
CCDC54-201ENST00000261058 SIRPB2Q5JXA9 342 aa4.19□□□□□ -1.74
CCDC54-201ENST00000261058 KRT80Q6KB66 452 aa4.19□□□□□ -1.74
CCDC54-201ENST00000261058 ZNF852Q6ZMS4 543 aa4.19□□□□□ -1.74
CCDC54-201ENST00000261058 C9orf139Q6ZV77 190 aa4.19□□□□□ -1.74
CCDC54-201ENST00000261058 SMIM29Q86T20 159 aa4.19□□□□□ -1.74
CCDC54-201ENST00000261058 SLC9B2Q86UD5 537 aa4.19□□□□□ -1.74
CCDC54-201ENST00000261058 NFE4Q86UQ8 179 aa4.19□□□□□ -1.74
CCDC54-201ENST00000261058 LONP2Q86WA8 852 aa4.19□□□□□ -1.74
CCDC54-201ENST00000261058 GPALPP1Q8IXQ4 340 aa4.19□□□□□ -1.74
CCDC54-201ENST00000261058 CPSF7Q8N684 471 aaKnown RBP4.19□□□□□ -1.74
CCDC54-201ENST00000261058 POC1AQ8NBT0 407 aa4.19□□□□□ -1.74
CCDC54-201ENST00000261058 DAZLQ92904 295 aaKnown RBP4.19□□□□□ -1.74
CCDC54-201ENST00000261058 RADILQ96JH8 1075 aa4.19□□□□□ -1.74
CCDC54-201ENST00000261058 ARGLU1Q9NWB6 273 aaPredicted RBP4.19□□□□□ -1.74
CCDC54-201ENST00000261058 OSER1Q9NX31 292 aa4.19□□□□□ -1.74
CCDC54-201ENST00000261058 ZNF580Q9UK33 172 aa4.19□□□□□ -1.74
CCDC54-201ENST00000261058 IGLV5-45A0A087WSX0 123 aa4.18□□□□□ -1.74
CCDC54-201ENST00000261058 PTGESO14684 152 aa4.18□□□□□ -1.74
CCDC54-201ENST00000261058 TSPAN1O60635 241 aa4.18□□□□□ -1.74
CCDC54-201ENST00000261058 F7P08709 466 aaPredicted RBP4.18□□□□□ -1.74
CCDC54-201ENST00000261058 OR2T7P0C7T2 308 aa4.18□□□□□ -1.74
CCDC54-201ENST00000261058 GLULP15104 373 aa4.18□□□□□ -1.74
CCDC54-201ENST00000261058 DNASE1P24855 282 aa4.18□□□□□ -1.74
CCDC54-201ENST00000261058 MARK3P27448 753 aa4.18□□□□□ -1.74
CCDC54-201ENST00000261058 CSE1LP55060 971 aaKnown RBP4.18□□□□□ -1.74
CCDC54-201ENST00000261058 DLX5P56178 289 aa4.18□□□□□ -1.74
CCDC54-201ENST00000261058 PRKAA1Q13131 559 aa4.18□□□□□ -1.74
CCDC54-201ENST00000261058 MFAP5Q13361 173 aa4.18□□□□□ -1.74
CCDC54-201ENST00000261058 ZNF672Q499Z4 452 aaPredicted RBP4.18□□□□□ -1.74
CCDC54-201ENST00000261058 TTC31Q49AM3 519 aaPredicted RBP4.18□□□□□ -1.74
CCDC54-201ENST00000261058 KLHL26Q53HC5 615 aa4.18□□□□□ -1.74
CCDC54-201ENST00000261058 NDUFAF5Q5TEU4 345 aa4.18□□□□□ -1.74
CCDC54-201ENST00000261058 CST9LP1Q5W188 147 aa4.18□□□□□ -1.74
CCDC54-201ENST00000261058 KCTD8Q6ZWB6 473 aa4.18□□□□□ -1.74
CCDC54-201ENST00000261058 TEKT4Q8WW24 435 aa4.18□□□□□ -1.74
CCDC54-201ENST00000261058 ATL1Q8WXF7 558 aa4.18□□□□□ -1.74
CCDC54-201ENST00000261058 MTERF3Q96E29 417 aa4.18□□□□□ -1.74
CCDC54-201ENST00000261058 CNDP2Q96KP4 475 aaKnown RBP4.18□□□□□ -1.74
CCDC54-201ENST00000261058 LMF2Q9BU23 707 aaKnown RBP4.18□□□□□ -1.74
CCDC54-201ENST00000261058 ANKRD2Q9GZV1 360 aa4.18□□□□□ -1.74
CCDC54-201ENST00000261058 ARRDC1-AS1Q9H2J1 176 aa4.18□□□□□ -1.74
CCDC54-201ENST00000261058 ERVMER34-1Q9H9K5 563 aa4.18□□□□□ -1.74
CCDC54-201ENST00000261058 ACKR4Q9NPB9 350 aa4.18□□□□□ -1.74
CCDC54-201ENST00000261058 ZNF701Q9NV72 531 aaPredicted RBP4.18□□□□□ -1.74
CCDC54-201ENST00000261058 EPS15L1Q9UBC2 864 aa4.18□□□□□ -1.74
CCDC54-201ENST00000261058 GREB1LQ9C091 1923 aaPredicted RBP4.18□□□□□ -1.74
CCDC54-201ENST00000261058 EDDM13A0A1B0GTR0 161 aa4.17□□□□□ -1.74
CCDC54-201ENST00000261058 A0A1W2PPQ1 181 aa4.17□□□□□ -1.74
CCDC54-201ENST00000261058 URADA6NGE7 173 aa4.17□□□□□ -1.74
CCDC54-201ENST00000261058 PRKNO60260 465 aaPredicted RBP4.17□□□□□ -1.74
CCDC54-201ENST00000261058 WDPCPO95876 746 aa4.17□□□□□ -1.74
CCDC54-201ENST00000261058 H1F0P07305 194 aaKnown RBP4.17□□□□□ -1.74
CCDC54-201ENST00000261058 CBLP22681 906 aa4.17□□□□□ -1.74
CCDC54-201ENST00000261058 MC5RP33032 325 aa4.17□□□□□ -1.74
CCDC54-201ENST00000261058 CTNNA1P35221 906 aaKnown RBP4.17□□□□□ -1.74
CCDC54-201ENST00000261058 PEX19P40855 299 aa4.17□□□□□ -1.74
CCDC54-201ENST00000261058 SSR1P43307 286 aaKnown RBP4.17□□□□□ -1.74
CCDC54-201ENST00000261058 NR2C2P49116 596 aa4.17□□□□□ -1.74
CCDC54-201ENST00000261058 THOP1P52888 689 aa4.17□□□□□ -1.74
CCDC54-201ENST00000261058 LIMK1P53667 647 aa4.17□□□□□ -1.74
CCDC54-201ENST00000261058 MBTD1Q05BQ5 628 aa4.17□□□□□ -1.74
CCDC54-201ENST00000261058 ARL16Q0P5N6 197 aa4.17□□□□□ -1.74
CCDC54-201ENST00000261058 PTPRCAPQ14761 206 aa4.17□□□□□ -1.74
CCDC54-201ENST00000261058 PSMD6Q15008 389 aa4.17□□□□□ -1.74
CCDC54-201ENST00000261058 C1orf141Q5JVX7 400 aa4.17□□□□□ -1.74
CCDC54-201ENST00000261058 CCNYL2Q5T2Q4 361 aa4.17□□□□□ -1.74
CCDC54-201ENST00000261058 PDSS1Q5T2R2 415 aa4.17□□□□□ -1.74
CCDC54-201ENST00000261058 C18orf65Q6ZTR6 163 aa4.17□□□□□ -1.74
CCDC54-201ENST00000261058 HSCBQ8IWL3 235 aa4.17□□□□□ -1.74
CCDC54-201ENST00000261058 CIARTQ8N365 385 aaPredicted RBP4.17□□□□□ -1.74
CCDC54-201ENST00000261058 ARL6IP6Q8N6S5 226 aa4.17□□□□□ -1.74
CCDC54-201ENST00000261058 TEX9Q8N6V9 391 aa4.17□□□□□ -1.74
CCDC54-201ENST00000261058 CCDC47Q96A33 483 aaKnown RBP4.17□□□□□ -1.74
CCDC54-201ENST00000261058 RMDN1Q96DB5 314 aa4.17□□□□□ -1.74
CCDC54-201ENST00000261058 MRPL9Q9BYD2 267 aaKnown RBP4.17□□□□□ -1.74
CCDC54-201ENST00000261058 VN1R1Q9GZP7 353 aa4.17□□□□□ -1.74
CCDC54-201ENST00000261058 ST6GALNAC4Q9H4F1 302 aa4.17□□□□□ -1.74
CCDC54-201ENST00000261058 CNOT10Q9H9A5 744 aaKnown RBP4.17□□□□□ -1.74
CCDC54-201ENST00000261058 APOBEC3GQ9HC16 384 aaKnown RBP4.17□□□□□ -1.74
CCDC54-201ENST00000261058 SPIN1Q9Y657 262 aaPredicted RBP4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms