RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 ASXL3Q9C0F0 2248 aa16.41■□□□□ 0.22
SDCBP-201ENST00000260130 OR52A4PA6NMU1 304 aa16.4■□□□□ 0.22
SDCBP-201ENST00000260130 F8W8V4 182 aa16.4■□□□□ 0.22
SDCBP-201ENST00000260130 PRMT5O14744 637 aaPredicted RBP16.4■□□□□ 0.22
SDCBP-201ENST00000260130 TTC4O95801 387 aa16.4■□□□□ 0.22
SDCBP-201ENST00000260130 VIPP01282 170 aa16.4■□□□□ 0.22
SDCBP-201ENST00000260130 FTH1P02794 183 aa16.4■□□□□ 0.22
SDCBP-201ENST00000260130 TARDBPQ13148 414 aaKnown RBP eCLIP16.4■□□□□ 0.22
SDCBP-201ENST00000260130 SPIDRQ14159 915 aa16.4■□□□□ 0.22
SDCBP-201ENST00000260130 LONRF1Q17RB8 773 aa16.4■□□□□ 0.22
SDCBP-201ENST00000260130 UBAP2Q5T6F2 1119 aaKnown RBP16.4■□□□□ 0.22
SDCBP-201ENST00000260130 EXOC3L1Q86VI1 746 aa16.4■□□□□ 0.22
SDCBP-201ENST00000260130 LILRA3Q8N6C8 439 aaPredicted RBP16.4■□□□□ 0.22
SDCBP-201ENST00000260130 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.4■□□□□ 0.22
SDCBP-201ENST00000260130 DYDC1Q8WWB3 177 aa16.4■□□□□ 0.22
SDCBP-201ENST00000260130 LRRC39Q96DD0 335 aa16.4■□□□□ 0.22
SDCBP-201ENST00000260130 PFDN6O15212 129 aa16.4■□□□□ 0.22
SDCBP-201ENST00000260130 THOC5Q13769 683 aaKnown RBP16.4■□□□□ 0.22
SDCBP-201ENST00000260130 TYSND1Q2T9J0 566 aa16.4■□□□□ 0.22
SDCBP-201ENST00000260130 ZNF658BQ4V348 819 aaPredicted RBP16.4■□□□□ 0.22
SDCBP-201ENST00000260130 RBM44Q6ZP01 1051 aaKnown RBP16.4■□□□□ 0.22
SDCBP-201ENST00000260130 TRPM8Q7Z2W7 1104 aa16.4■□□□□ 0.22
SDCBP-201ENST00000260130 IGDCC3Q8IVU1 814 aa16.4■□□□□ 0.22
SDCBP-201ENST00000260130 TRIM48Q8IWZ4 208 aa16.4■□□□□ 0.22
SDCBP-201ENST00000260130 CXorf40BQ96DE9 158 aa16.4■□□□□ 0.22
SDCBP-201ENST00000260130 GFM1Q96RP9 751 aaKnown RBP16.4■□□□□ 0.22
SDCBP-201ENST00000260130 LDHAL6BQ9BYZ2 381 aaPredicted RBP16.4■□□□□ 0.22
SDCBP-201ENST00000260130 COG4Q9H9E3 785 aa16.4■□□□□ 0.22
SDCBP-201ENST00000260130 C20orf96Q9NUD7 363 aaPredicted RBP16.4■□□□□ 0.22
SDCBP-201ENST00000260130 GEMIN8Q9NWZ8 242 aaKnown RBP16.4■□□□□ 0.22
SDCBP-201ENST00000260130 SLC12A4Q9UP95 1085 aa16.4■□□□□ 0.22
SDCBP-201ENST00000260130 OGNP20774 298 aaKnown RBP16.39■□□□□ 0.21
SDCBP-201ENST00000260130 ELK3P41970 407 aa16.39■□□□□ 0.21
SDCBP-201ENST00000260130 CRYMQ14894 314 aa16.39■□□□□ 0.21
SDCBP-201ENST00000260130 RPE65Q16518 533 aa16.39■□□□□ 0.21
SDCBP-201ENST00000260130 HP1BP3Q5SSJ5 553 aaPredicted RBP16.39■□□□□ 0.21
SDCBP-201ENST00000260130 ZNF761Q86XN6 746 aaPredicted RBP16.39■□□□□ 0.21
SDCBP-201ENST00000260130 CILP2Q8IUL8 1156 aa16.39■□□□□ 0.21
SDCBP-201ENST00000260130 DEPDC7Q96QD5 511 aa16.39■□□□□ 0.21
SDCBP-201ENST00000260130 MYCBPQ99417 103 aaPredicted RBP16.39■□□□□ 0.21
SDCBP-201ENST00000260130 WWP1Q9H0M0 922 aa16.39■□□□□ 0.21
SDCBP-201ENST00000260130 KCNK4Q9NYG8 393 aa16.39■□□□□ 0.21
SDCBP-201ENST00000260130 ZFC3H1O60293 1989 aaKnown RBP16.39■□□□□ 0.21
SDCBP-201ENST00000260130 MGRN1O60291 552 aa16.38■□□□□ 0.21
SDCBP-201ENST00000260130 ACSL3O95573 720 aa16.38■□□□□ 0.21
SDCBP-201ENST00000260130 SLC35G4P0C7Q5 338 aa16.38■□□□□ 0.21
SDCBP-201ENST00000260130 RPA4Q13156 261 aa16.38■□□□□ 0.21
SDCBP-201ENST00000260130 AMZ1Q400G9 498 aa16.38■□□□□ 0.21
SDCBP-201ENST00000260130 SPANXN3Q5MJ09 141 aa16.38■□□□□ 0.21
SDCBP-201ENST00000260130 ZNF449Q6P9G9 518 aa16.38■□□□□ 0.21
SDCBP-201ENST00000260130 LRRC6Q86X45 466 aa16.38■□□□□ 0.21
SDCBP-201ENST00000260130 LMNTD2Q8IXW0 634 aa16.38■□□□□ 0.21
SDCBP-201ENST00000260130 ELMO1Q92556 727 aa16.38■□□□□ 0.21
SDCBP-201ENST00000260130 P2RY12Q9H244 342 aa16.38■□□□□ 0.21
SDCBP-201ENST00000260130 POT1Q9NUX5 634 aa16.38■□□□□ 0.21
SDCBP-201ENST00000260130 TEX264Q9Y6I9 313 aa16.38■□□□□ 0.21
SDCBP-201ENST00000260130 RP1P56715 2156 aa16.38■□□□□ 0.21
SDCBP-201ENST00000260130 IGHV1OR21-1A0A087WYE8 117 aa16.38■□□□□ 0.21
SDCBP-201ENST00000260130 UBA6A0AVT1 1052 aaPredicted RBP16.38■□□□□ 0.21
SDCBP-201ENST00000260130 CFAP73A6NFT4 308 aa16.38■□□□□ 0.21
SDCBP-201ENST00000260130 LIN7AO14910 233 aaPredicted RBP16.38■□□□□ 0.21
SDCBP-201ENST00000260130 RPS3P23396 243 aaKnown RBP eCLIP16.38■□□□□ 0.211e-6■■■□□ 16.9
SDCBP-201ENST00000260130 CD1CP29017 333 aa16.38■□□□□ 0.21
SDCBP-201ENST00000260130 PDIA2Q13087 525 aaKnown RBP16.38■□□□□ 0.21
SDCBP-201ENST00000260130 CBLBQ13191 982 aa16.38■□□□□ 0.21
SDCBP-201ENST00000260130 ZNF470Q6ECI4 717 aa16.38■□□□□ 0.21
SDCBP-201ENST00000260130 PTRHD1Q6GMV3 140 aaKnown RBP16.38■□□□□ 0.21
SDCBP-201ENST00000260130 CAPRIN2Q6IMN6 1127 aaKnown RBP16.38■□□□□ 0.21
SDCBP-201ENST00000260130 CENPUQ71F23 418 aa16.38■□□□□ 0.21
SDCBP-201ENST00000260130 RBM12BQ8IXT5 1001 aaKnown RBP16.38■□□□□ 0.21
SDCBP-201ENST00000260130 SPDYE1Q8NFV5 336 aaPredicted RBP16.38■□□□□ 0.21
SDCBP-201ENST00000260130 CALML6Q8TD86 181 aa16.38■□□□□ 0.21
SDCBP-201ENST00000260130 INSM2Q96T92 566 aaPredicted RBP16.38■□□□□ 0.21
SDCBP-201ENST00000260130 TSSK1BQ9BXA7 367 aa16.38■□□□□ 0.21
SDCBP-201ENST00000260130 UCK1Q9HA47 277 aa16.38■□□□□ 0.21
SDCBP-201ENST00000260130 ZC3H7BQ9UGR2 993 aaKnown RBP16.38■□□□□ 0.21
SDCBP-201ENST00000260130 GNPTGQ9UJJ9 305 aa16.38■□□□□ 0.21
SDCBP-201ENST00000260130 ATXN7L1Q9ULK2 861 aaPredicted RBP16.38■□□□□ 0.21
SDCBP-201ENST00000260130 CHMP2BQ9UQN3 213 aa16.38■□□□□ 0.21
SDCBP-201ENST00000260130 D6RAR5 112 aa16.37■□□□□ 0.21
SDCBP-201ENST00000260130 E7ESA3 106 aa16.37■□□□□ 0.21
SDCBP-201ENST00000260130 SNX3O60493 162 aa16.37■□□□□ 0.21
SDCBP-201ENST00000260130 CSO75390 466 aaKnown RBP16.37■□□□□ 0.21
SDCBP-201ENST00000260130 GPLD1P80108 840 aa16.37■□□□□ 0.21
SDCBP-201ENST00000260130 ISXQ2M1V0 245 aa16.37■□□□□ 0.21
SDCBP-201ENST00000260130 HSP90AA5PQ58FG0 334 aa16.37■□□□□ 0.21
SDCBP-201ENST00000260130 TMEM26Q6ZUK4 368 aa16.37■□□□□ 0.21
SDCBP-201ENST00000260130 USP53Q70EK8 1073 aa16.37■□□□□ 0.21
SDCBP-201ENST00000260130 UNC5BQ8IZJ1 945 aa16.37■□□□□ 0.21
SDCBP-201ENST00000260130 LPGAT1Q92604 370 aa16.37■□□□□ 0.21
SDCBP-201ENST00000260130 C12orf66Q96MD2 445 aa16.37■□□□□ 0.21
SDCBP-201ENST00000260130 PLCD4Q9BRC7 762 aa16.37■□□□□ 0.21
SDCBP-201ENST00000260130 WDR83Q9BRX9 315 aaKnown RBP16.37■□□□□ 0.21
SDCBP-201ENST00000260130 OR52A5Q9H2C5 316 aa16.37■□□□□ 0.21
SDCBP-201ENST00000260130 IMP3Q9NV31 184 aaKnown RBP16.37■□□□□ 0.21
SDCBP-201ENST00000260130 INTS10Q9NVR2 710 aaKnown RBP16.37■□□□□ 0.21
SDCBP-201ENST00000260130 VPS9D1Q9Y2B5 631 aa16.37■□□□□ 0.21
SDCBP-201ENST00000260130 CFAP20Q9Y6A4 193 aaKnown RBP16.37■□□□□ 0.21
SDCBP-201ENST00000260130 CEP295Q9C0D2 2601 aa16.37■□□□□ 0.21
SDCBP-201ENST00000260130 ASPMQ8IZT6 3477 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms