RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 OR52E6Q96RD3 313 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 C17orf62Q9BQA9 187 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 EPB41L1Q9H4G0 881 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 CCDC167Q9P0B6 97 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 LOC285556D6RIA3 1793 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 ZSCAN9O15535 394 aaPredicted RBP13.41□□□□□ -0.26
LDLR-201ENST00000252444 HNRNPA1L2Q32P51 320 aaKnown RBP13.41□□□□□ -0.26
LDLR-201ENST00000252444 TJAP1Q5JTD0 557 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 MSANTD1Q6ZTZ1 278 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 CAB39LQ9H9S4 337 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 C19orf25Q9UFG5 118 aaPredicted RBP13.41□□□□□ -0.26
LDLR-201ENST00000252444 F11P03951 625 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 IFNA16P05015 189 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 CACUL1Q86Y37 369 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 ZMIZ2Q8NF64 920 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 HLA-CQ95604 372 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 ZNF446Q9NWS9 450 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 MS4A12Q9NXJ0 267 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 WARS2Q9UGM6 360 aaKnown RBP13.41□□□□□ -0.26
LDLR-201ENST00000252444 SNX13Q9Y5W8 968 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 BIKQ13323 160 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 TTC23Q5W5X9 447 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 CCSAPQ6IQ19 270 aaPredicted RBP13.4□□□□□ -0.26
LDLR-201ENST00000252444 TBC1D21Q8IYX1 336 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 OR13C4Q8NGS5 318 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 SHKBP1Q8TBC3 707 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 PANX1Q96RD7 426 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 SPATA9Q9BWV2 254 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 STRADBQ9C0K7 418 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 ADAM7Q9H2U9 754 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 CAAP1Q9H8G2 361 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 MOCS1Q9NZB8 636 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 HOXC11O43248 304 aaPredicted RBP13.4□□□□□ -0.26
LDLR-201ENST00000252444 UGDHO60701 494 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 PEX11AO75192 247 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 POP7O75817 140 aaKnown RBP13.4□□□□□ -0.26
LDLR-201ENST00000252444 TCF4P15884 667 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 C1DQ13901 141 aaKnown RBP13.4□□□□□ -0.26
LDLR-201ENST00000252444 RCN1Q15293 331 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 C3orf58Q8NDZ4 430 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 CYGBQ8WWM9 190 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 FIG4Q92562 907 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 ZDHHC12Q96GR4 267 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 KCNH6Q9H252 994 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 ANKHQ9HCJ1 492 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 KRT84Q9NSB2 600 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 SLC17A7Q9P2U7 560 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 EPHA6Q9UF33 1036 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 TPRKBQ9Y3C4 175 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 POLR3HQ9Y535 204 aaPredicted RBP13.4□□□□□ -0.26
LDLR-201ENST00000252444 IGLV3-10A0A075B6K4 115 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 HBQ1P09105 142 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 ACTR1BP42025 376 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 MAPK12P53778 367 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 ACTR1AP61163 376 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 CPSF6Q16630 551 aaKnown RBP eCLIP13.4□□□□□ -0.26
LDLR-201ENST00000252444 GCNT6Q5T4J0 391 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 STON1Q9Y6Q2 735 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 TCRBV21S2A2A0A5A6 115 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 C2orf74A8MZ97 194 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 NUP107P57740 925 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 USP46P62068 366 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 GRM2Q14416 872 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 CASP12Q6UXS9 341 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 LINC00471Q8N535 108 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 LRMDAQ9H2I8 198 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 EVA1AQ9H8M9 152 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 PCDH12Q9NPG4 1184 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 MARK1Q9P0L2 795 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 LIMD1Q9UGP4 676 aa13.4□□□□□ -0.26
LDLR-201ENST00000252444 RSL1D1O76021 490 aaKnown RBP13.39□□□□□ -0.27
LDLR-201ENST00000252444 SRCP12931 536 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 EPCAMP16422 314 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 HNF1BP35680 557 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 CAPZA2P47755 286 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 RABGGTBP53611 331 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 ZNF252P-AS1Q0IIN9 211 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 TSNQ15631 228 aaKnown RBP13.39□□□□□ -0.27
LDLR-201ENST00000252444 MACC1Q6ZN28 852 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 OR2T34Q8NGX1 318 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 ZNF382Q96SR6 550 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 ZIC5Q96T25 663 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 DPYSL5Q9BPU6 564 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 IL37Q9NZH6 218 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 ENTPD2Q9Y5L3 495 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 PLXNB2O15031 1838 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 DICER1Q9UPY3 1922 aaKnown RBP13.39□□□□□ -0.27
LDLR-201ENST00000252444 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.39□□□□□ -0.27
LDLR-201ENST00000252444 CLDN7O95471 211 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 CEBPBP17676 345 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 SMAD4Q13485 552 aaKnown RBP13.39□□□□□ -0.27
LDLR-201ENST00000252444 FASTKD3Q14CZ7 662 aaKnown RBP13.39□□□□□ -0.27
LDLR-201ENST00000252444 GATA5Q9BWX5 397 aaPredicted RBP13.39□□□□□ -0.27
LDLR-201ENST00000252444 PELI2Q9HAT8 420 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 COL4A1P02462 1669 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 AP3D1O14617 1153 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 GJA1P17302 382 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 SLC6A2P23975 617 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 CPA2P48052 419 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 TRAP1Q12931 704 aaKnown RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms