RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 LINGO1Q96FE5 620 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 MYO19Q96H55 970 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 MRPL1Q9BYD6 325 aaKnown RBP8.52□□□□□ -1.05
VPS4B-201ENST00000238497 RSPH9Q9H1X1 276 aaPredicted RBP8.52□□□□□ -1.05
VPS4B-201ENST00000238497 GAREM1Q9H706 876 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 FBRSQ9HAH7 460 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 IGSF5Q9NSI5 407 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 ZNHIT2Q9UHR6 403 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 ZBTB32Q9Y2Y4 487 aaPredicted RBP8.52□□□□□ -1.05
VPS4B-201ENST00000238497 COPG1Q9Y678 874 aaKnown RBP8.52□□□□□ -1.05
VPS4B-201ENST00000238497 EML5Q05BV3 1969 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 DNAJA2O60884 412 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 ANPEPP15144 967 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 PRDX3P30048 256 aaKnown RBP8.51□□□□□ -1.05
VPS4B-201ENST00000238497 MAPKAPK2P49137 400 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 BCL2L1Q07817 233 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 EIF4EBP2Q13542 120 aaPredicted RBP8.51□□□□□ -1.05
VPS4B-201ENST00000238497 CYTH1Q15438 398 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 PIWIL4Q7Z3Z4 852 aaKnown RBP8.51□□□□□ -1.05
VPS4B-201ENST00000238497 KIAA0907Q7Z7F0 614 aaPredicted RBP8.51□□□□□ -1.05
VPS4B-201ENST00000238497 CLEC14AQ86T13 490 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 ISCA2Q86U28 154 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 RAB3IL1Q8TBN0 382 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 BOCQ9BWV1 1114 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 COPS7BQ9H9Q2 264 aaPredicted RBP8.51□□□□□ -1.05
VPS4B-201ENST00000238497 WDR41Q9HAD4 459 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 AURKCQ9UQB9 309 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 SLCO1B1Q9Y6L6 691 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 BPTFQ12830 3046 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 A0A088AWK7 358 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 SPAARA0A1B0GVQ0 90 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 CCDC189A1A4V9 331 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 RGSL1A5PLK6 1076 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 KRT87PA6NCN2 255 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 VPS26AO75436 327 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 UGT2B4P06133 528 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 SRCP12931 536 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 AKT1P31749 480 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 TUBB3Q13509 450 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 CAPRIN1Q14444 709 aaKnown RBP8.51□□□□□ -1.05
VPS4B-201ENST00000238497 ARSIQ5FYB1 569 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 FAM45BPQ6NSW5 357 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 SLC23A3Q6PIS1 610 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 METTL3Q86U44 580 aaKnown RBP8.51□□□□□ -1.05
VPS4B-201ENST00000238497 CHST14Q8NCH0 376 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 FAM45AQ8TCE6 357 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 NUDT8Q8WV74 236 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 NRG4Q8WWG1 115 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 LMLNQ96KR4 655 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 EFCAB1Q9HAE3 211 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 SGK2Q9HBY8 427 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 DNAJC28Q9NX36 388 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 GMPR2Q9P2T1 348 aaKnown RBP8.51□□□□□ -1.05
VPS4B-201ENST00000238497 EGFL7Q9UHF1 273 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 ANGPTL2Q9UKU9 493 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 POMPQ9Y244 141 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 DRGXA6NNA5 263 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 TMEM114B3SHH9 223 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 PSMD12O00232 456 aaPredicted RBP8.51□□□□□ -1.05
VPS4B-201ENST00000238497 CDX4O14627 284 aaPredicted RBP8.51□□□□□ -1.05
VPS4B-201ENST00000238497 KCNK5O95279 499 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 ADH1BP00325 375 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 HGFP14210 728 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 XRCC1P18887 633 aaPredicted RBP8.51□□□□□ -1.05
VPS4B-201ENST00000238497 SPINK2P20155 84 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 C5AR1P21730 350 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 PPARGP37231 505 aaPredicted RBP8.51□□□□□ -1.05
VPS4B-201ENST00000238497 LEPRP48357 1165 aaKnown RBP8.51□□□□□ -1.05
VPS4B-201ENST00000238497 THOP1P52888 689 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 ARF5P84085 180 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 HSPA14Q0VDF9 509 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 CNTN1Q12860 1018 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 PTK2BQ14289 1009 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 VPS26BQ4G0F5 336 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 TECRLQ5HYJ1 363 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 TMEM154Q6P9G4 183 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 BNC2Q6ZN30 1099 aaPredicted RBP8.51□□□□□ -1.05
VPS4B-201ENST00000238497 SETD3Q86TU7 594 aaPredicted RBP8.51□□□□□ -1.05
VPS4B-201ENST00000238497 ZNF683Q8IZ20 524 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 DCAF4L2Q8NA75 395 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 KDM1BQ8NB78 822 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 ICA1LQ8NDH6 482 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 CADM4Q8NFZ8 388 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 SLC6A18Q96N87 628 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 GPR78Q96P69 363 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 PPP1R2P1Q96PQ5 205 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 PSKH2Q96QS6 385 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 FAM129BQ96TA1 746 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 HGH1Q9BTY7 390 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 YIPF3Q9GZM5 350 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 SARDHQ9UL12 918 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 TBC1D30Q9Y2I9 924 aa8.51□□□□□ -1.05
VPS4B-201ENST00000238497 A0A1B0GTL3 188 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 PIP5K1BO14986 540 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 SH3BP5O60239 455 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 CCNT2O60583 730 aaKnown RBP8.5□□□□□ -1.05
VPS4B-201ENST00000238497 HOXD12P35452 270 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 AFF3P51826 1226 aaKnown RBP8.5□□□□□ -1.05
VPS4B-201ENST00000238497 SH3BP2P78314 561 aa8.5□□□□□ -1.05
VPS4B-201ENST00000238497 ARHGEF7Q14155 803 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms