RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 FAM180BQ6P0A1 224 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 IGFN1Q86VF2 1251 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 HID1Q8IV36 788 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 PAPD5Q8NDF8 572 aaKnown RBP10.5□□□□□ -0.73
USP28-201ENST00000003302 ITFG1Q8TB96 612 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 NSMCE2Q96MF7 247 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 PSKH2Q96QS6 385 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 NEURL2Q9BR09 285 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 LRRC3Q9BY71 257 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 TNKS2Q9H2K2 1166 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 AMBNQ9NP70 447 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 SIRT5Q9NXA8 310 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 PCDHB14Q9Y5E9 798 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 BNIP3LO60238 219 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 GLUD1P00367 558 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 UROSP10746 265 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 ITGADQ13349 1161 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 DNASE1L3Q13609 305 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 TTC30BQ8N4P2 665 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 RNF167Q9H6Y7 350 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 FAM118AQ9NWS6 357 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 KLQ9UEF7 1012 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 BBIP1A8MTZ0 92 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 KLK8O60259 260 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 BCAS1O75363 584 aaPredicted RBP10.49□□□□□ -0.73
USP28-201ENST00000003302 HLA-DPA1P20036 260 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 MAGP20916 626 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 IL1RL1Q01638 556 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 RAD51Q06609 339 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 CYP27C1Q4G0S4 372 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 CATSPEREQ5SY80 951 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 GABPB2Q8TAK5 448 aaPredicted RBP10.49□□□□□ -0.73
USP28-201ENST00000003302 ZFP90Q8TF47 636 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 TSSK3Q96PN8 268 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 NRTNQ99748 197 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 KATNAL1Q9BW62 490 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 ADGRE2Q9UHX3 823 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 PCDHB8Q9UN66 801 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 HELZP42694 1942 aaKnown RBP10.49□□□□□ -0.73
USP28-201ENST00000003302 CLDN7O95471 211 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 FTH1P02794 183 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 CKBP12277 381 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 TNFRSF1BP20333 461 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 HLCSP50747 726 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 PPP2R2BQ00005 443 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 PRKG2Q13237 762 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 GBX1Q14549 363 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 BEND5Q7L4P6 421 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 DSG4Q86SJ6 1040 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 VRK3Q8IV63 474 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 RGL4Q8IZJ4 473 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 LIX1Q8N485 282 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 AFAP1L2Q8N4X5 818 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 DTNBP1Q96EV8 351 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 CCDC90BQ9GZT6 254 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 FAIMQ9NVQ4 179 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 TRNAU1APQ9NX07 287 aaKnown RBP10.49□□□□□ -0.73
USP28-201ENST00000003302 AFF4Q9UHB7 1163 aaKnown RBP10.49□□□□□ -0.73
USP28-201ENST00000003302 CDH7Q9ULB5 785 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 PNMA8BQ9ULN7 279 aaPredicted RBP10.49□□□□□ -0.73
USP28-201ENST00000003302 PPT2Q9UMR5 302 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 FAM92AA1XBS5 289 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 LOC730098B7Z3J9 87 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 SEC24AO95486 1093 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 CST1P01037 141 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 ENO2P09104 434 aaPredicted RBP10.49□□□□□ -0.73
USP28-201ENST00000003302 CRISP3P54108 245 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 VBP1P61758 197 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 KLHL17Q6TDP4 642 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 PDZD8Q8NEN9 1154 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 AUTS2Q8WXX7 1259 aa10.49□□□□□ -0.73
USP28-201ENST00000003302 FUOMA2VDF0 154 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 MBL2P11226 248 aaPredicted RBP10.48□□□□□ -0.73
USP28-201ENST00000003302 ACPPP15309 386 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 ZNF135P52742 658 aaPredicted RBP10.48□□□□□ -0.73
USP28-201ENST00000003302 FXNQ16595 210 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 CTF1Q16619 201 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 RNF219Q5W0B1 726 aaPredicted RBP10.48□□□□□ -0.73
USP28-201ENST00000003302 APCDD1Q8J025 514 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 CINPQ9BW66 212 aaPredicted RBP10.48□□□□□ -0.73
USP28-201ENST00000003302 VN1R3Q9BXE9 311 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 RRAGCQ9HB90 399 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 LATS2Q9NRM7 1088 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 GID8Q9NWU2 228 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 LEF1Q9UJU2 399 aaPredicted RBP10.48□□□□□ -0.73
USP28-201ENST00000003302 TRIM64BA6NI03 449 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 hCG_2039718K7EN88 272 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 FFAR2O15552 330 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 SEC14L2O76054 403 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 GPIP06744 558 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 NUDT7P0C024 238 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 GGT1P19440 569 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 SLC11A1P49279 550 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 ZNF157P51786 506 aaPredicted RBP10.48□□□□□ -0.73
USP28-201ENST00000003302 CRYBA2P53672 197 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 IL2P60568 153 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 NCS1P62166 190 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 BNIP2Q12982 314 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 GTF2H2Q13888 395 aa10.48□□□□□ -0.73
USP28-201ENST00000003302 DAG1Q14118 895 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms