RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 NUBP1P53384 320 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 ROR1Q01973 937 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 SP2Q02086 613 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 PUM1Q14671 1186 aaKnown RBP eCLIP5.66□□□□□ -1.5
SCN1A-216ENST00000637968 GPR19Q15760 415 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 SYT16Q17RD7 645 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 SLC9B1Q4ZJI4 515 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 ACAD10Q6JQN1 1059 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 KIAA1324Q6UXG2 1013 aaKnown RBP5.66□□□□□ -1.5
SCN1A-216ENST00000637968 RTL4Q6ZR62 310 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 SLC9B2Q86UD5 537 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 GPAT4Q86UL3 456 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 SIAH1Q8IUQ4 282 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 KLHL36Q8N4N3 616 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 CEP76Q8TAP6 659 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 FAM45AQ8TCE6 357 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 DYNC2LI1Q8TCX1 351 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 TBCKQ8TEA7 893 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 NELL1Q92832 810 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 RPL3LQ92901 407 aaKnown RBP5.66□□□□□ -1.5
SCN1A-216ENST00000637968 TRMT2BQ96GJ1 504 aaKnown RBP5.66□□□□□ -1.5
SCN1A-216ENST00000637968 ZFP42Q96MM3 310 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 STRBPQ96SI9 672 aaKnown RBP5.66□□□□□ -1.5
SCN1A-216ENST00000637968 WDR77Q9BQA1 342 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-216ENST00000637968 APOL2Q9BQE5 337 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 ACTR6Q9GZN1 396 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 EML4Q9HC35 981 aaKnown RBP5.66□□□□□ -1.5
SCN1A-216ENST00000637968 SLAMF7Q9NQ25 335 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 GSN-AS1Q9NRJ2 163 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 STOX2Q9P2F5 926 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-216ENST00000637968 RNF6Q9Y252 685 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 POFUT2Q9Y2G5 429 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 SNCAIPQ9Y6H5 919 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 HEG1Q9ULI3 1381 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 NEURL4Q96JN8 1562 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 FAM221BA6H8Z2 402 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 FABP12A6NFH5 140 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 KIAA0355O15063 1070 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 SSNA1O43805 119 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 PMPCBO75439 489 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 PROSCO94903 275 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 PGK1P00558 417 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 HNRNPLP14866 589 aaKnown RBP eCLIP5.66□□□□□ -1.59e-7■■■□□ 16.9
SCN1A-216ENST00000637968 GRIA1P42261 906 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 MAP2K3P46734 347 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 ALDH3A2P51648 485 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 JAM2P57087 298 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 RBP5P82980 135 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 GRB10Q13322 594 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 TNK1Q13470 666 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 SEC23BQ15437 767 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 IQCCQ4KMZ1 466 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 TEX44Q53QW1 395 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 C2CD6Q53TS8 623 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 AVPI1Q5T686 147 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 NXNL2Q5VZ03 156 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 LRFN4Q6PJG9 635 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 EPGNQ6UW88 154 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 PGAP1Q75T13 922 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 STRADAQ7RTN6 431 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 COQ8AQ8NI60 647 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 KAT2AQ92830 837 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 DIRAS2Q96HU8 199 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 RDH12Q96NR8 316 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 FOLH1BQ9HBA9 442 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 RAB6BQ9NRW1 208 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 EXD2Q9NVH0 621 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 MYEF2Q9P2K5 600 aaKnown RBP5.66□□□□□ -1.5
SCN1A-216ENST00000637968 CTSFQ9UBX1 484 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 AXIN2Q9Y2T1 843 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 CLTCQ00610 1675 aaKnown RBP5.66□□□□□ -1.5
SCN1A-216ENST00000637968 TULP4Q9NRJ4 1543 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 CASZ1Q86V15 1759 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 PIPSLA2A3N6 862 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 POTEMA6NI47 508 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 TSTD3H0UI37 97 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 LINC01387J3KSC0 135 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 BCKDKO14874 412 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 XPNPEP2O43895 674 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 CYBBP04839 570 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 ADRB1P08588 477 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 RRASP10301 218 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 LBPP18428 481 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 CPN2P22792 545 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 GABRB3P28472 473 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 GCLMP48507 274 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 LIMK1P53667 647 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 KCNJ10P78508 379 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 CREMQ03060 361 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 GPR50Q13585 617 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 CLEC16AQ2KHT3 1053 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 REP15Q6BDI9 236 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 OR7E24Q6IFN5 339 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 DPH6Q7L8W6 267 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 HIPK1Q86Z02 1210 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 CDKL3Q8IVW4 592 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-216ENST00000637968 ZNF557Q8N988 423 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-216ENST00000637968 OR6C4Q8NGE1 309 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 USP7Q93009 1102 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 HOPXQ9BPY8 73 aaPredicted RBP5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms