RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 ITIH4Q14624 930 aa18.79■□□□□ 0.6
CLN3-260ENST00000637578 PPP1R7Q15435 360 aa18.79■□□□□ 0.6
CLN3-260ENST00000637578 PACS1Q6VY07 963 aa18.79■□□□□ 0.6
CLN3-260ENST00000637578 NLRP9Q7RTR0 991 aa18.79■□□□□ 0.6
CLN3-260ENST00000637578 CLDN19Q8N6F1 224 aa18.79■□□□□ 0.6
CLN3-260ENST00000637578 KLHL6Q8WZ60 621 aa18.79■□□□□ 0.6
CLN3-260ENST00000637578 NKD1Q969G9 470 aa18.79■□□□□ 0.6
CLN3-260ENST00000637578 ZDHHC12Q96GR4 267 aa18.79■□□□□ 0.6
CLN3-260ENST00000637578 RMDN2Q96LZ7 410 aa18.79■□□□□ 0.6
CLN3-260ENST00000637578 C12orf66Q96MD2 445 aa18.79■□□□□ 0.6
CLN3-260ENST00000637578 ZNF778Q96MU6 729 aa18.79■□□□□ 0.6
CLN3-260ENST00000637578 TUBB2BQ9BVA1 445 aa18.79■□□□□ 0.6
CLN3-260ENST00000637578 OR52A5Q9H2C5 316 aa18.79■□□□□ 0.6
CLN3-260ENST00000637578 IMP3Q9NV31 184 aaKnown RBP18.79■□□□□ 0.6
CLN3-260ENST00000637578 CFAP20Q9Y6A4 193 aaKnown RBP18.79■□□□□ 0.6
CLN3-260ENST00000637578 SMG1Q96Q15 3661 aaKnown RBP18.78■□□□□ 0.6
CLN3-260ENST00000637578 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP18.78■□□□□ 0.6
CLN3-260ENST00000637578 OR51F1A6NGY5 319 aa18.78■□□□□ 0.6
CLN3-260ENST00000637578 ERVH48-1M5A8F1 160 aa18.78■□□□□ 0.6
CLN3-260ENST00000637578 POLBP06746 335 aa18.78■□□□□ 0.6
CLN3-260ENST00000637578 SLC35G4P0C7Q5 338 aa18.78■□□□□ 0.6
CLN3-260ENST00000637578 SRSF6Q13247 344 aaKnown RBP18.78■□□□□ 0.6
CLN3-260ENST00000637578 WBP1Q96G27 269 aa18.78■□□□□ 0.6
CLN3-260ENST00000637578 KIR3DX1Q9H7L2 352 aa18.78■□□□□ 0.6
CLN3-260ENST00000637578 COG4Q9H9E3 785 aa18.78■□□□□ 0.6
CLN3-260ENST00000637578 VPS37BQ9H9H4 285 aa18.78■□□□□ 0.6
CLN3-260ENST00000637578 SLC2A6Q9UGQ3 507 aa18.78■□□□□ 0.6
CLN3-260ENST00000637578 SLC24A2Q9UI40 661 aa18.78■□□□□ 0.6
CLN3-260ENST00000637578 PILRAQ9UKJ1 303 aa18.78■□□□□ 0.6
CLN3-260ENST00000637578 CCDC78A2IDD5 438 aa18.77■□□□□ 0.6
CLN3-260ENST00000637578 TTI1O43156 1089 aa18.77■□□□□ 0.6
CLN3-260ENST00000637578 KIF1CO43896 1103 aaKnown RBP18.77■□□□□ 0.6
CLN3-260ENST00000637578 NSG1P42857 185 aa18.77■□□□□ 0.6
CLN3-260ENST00000637578 CD151P48509 253 aa18.77■□□□□ 0.6
CLN3-260ENST00000637578 TERF1P54274 439 aa18.77■□□□□ 0.6
CLN3-260ENST00000637578 RPA4Q13156 261 aa18.77■□□□□ 0.6
CLN3-260ENST00000637578 PTK6Q13882 451 aa18.77■□□□□ 0.6
CLN3-260ENST00000637578 KLHL35Q6PF15 583 aa18.77■□□□□ 0.6
CLN3-260ENST00000637578 CEACAM20Q6UY09 585 aa18.77■□□□□ 0.6
CLN3-260ENST00000637578 TTC9Q92623 222 aa18.77■□□□□ 0.6
CLN3-260ENST00000637578 HDAC10Q969S8 669 aa18.77■□□□□ 0.6
CLN3-260ENST00000637578 APMAPQ9HDC9 416 aa18.77■□□□□ 0.6
CLN3-260ENST00000637578 TCAF1Q9Y4C2 921 aa18.77■□□□□ 0.6
CLN3-260ENST00000637578 MRPS25P82663 173 aaKnown RBP18.76■□□□□ 0.59
CLN3-260ENST00000637578 DHX34Q14147 1143 aaKnown RBP18.76■□□□□ 0.59
CLN3-260ENST00000637578 MANEAQ5SRI9 462 aa18.76■□□□□ 0.59
CLN3-260ENST00000637578 DUS1LQ6P1R4 473 aaKnown RBP18.76■□□□□ 0.59
CLN3-260ENST00000637578 ZNF534Q76KX8 674 aa18.76■□□□□ 0.59
CLN3-260ENST00000637578 JPH3Q8WXH2 748 aaPredicted RBP18.76■□□□□ 0.59
CLN3-260ENST00000637578 CTRCQ99895 268 aa18.76■□□□□ 0.59
CLN3-260ENST00000637578 TRIM51Q9BSJ1 452 aa18.76■□□□□ 0.59
CLN3-260ENST00000637578 FAM8A1Q9UBU6 413 aa18.76■□□□□ 0.59
CLN3-260ENST00000637578 ASIC3Q9UHC3 531 aa18.76■□□□□ 0.59
CLN3-260ENST00000637578 TMEM184BQ9Y519 407 aaPredicted RBP18.76■□□□□ 0.59
CLN3-260ENST00000637578 HEBP2Q9Y5Z4 205 aa18.76■□□□□ 0.59
CLN3-260ENST00000637578 PRSS21Q9Y6M0 314 aa18.76■□□□□ 0.59
CLN3-260ENST00000637578 COLEC10Q9Y6Z7 277 aa18.76■□□□□ 0.59
CLN3-260ENST00000637578 OR5K3A6NET4 321 aa18.76■□□□□ 0.59
CLN3-260ENST00000637578 QSOX1O00391 747 aa18.76■□□□□ 0.59
CLN3-260ENST00000637578 POLR1CO15160 346 aaPredicted RBP18.76■□□□□ 0.59
CLN3-260ENST00000637578 GOT2P00505 430 aaKnown RBP18.76■□□□□ 0.59
CLN3-260ENST00000637578 NELFEP18615 380 aaKnown RBP18.76■□□□□ 0.59
CLN3-260ENST00000637578 NDUFS1P28331 727 aa18.76■□□□□ 0.59
CLN3-260ENST00000637578 PPP1CAP62136 330 aa18.76■□□□□ 0.59
CLN3-260ENST00000637578 PCID2Q5JVF3 399 aa18.76■□□□□ 0.59
CLN3-260ENST00000637578 CACHD1Q5VU97 1274 aa18.76■□□□□ 0.59
CLN3-260ENST00000637578 LYPLAL1Q5VWZ2 237 aa18.76■□□□□ 0.59
CLN3-260ENST00000637578 IRGCQ6NXR0 463 aa18.76■□□□□ 0.59
CLN3-260ENST00000637578 AFTPHQ6ULP2 937 aa18.76■□□□□ 0.59
CLN3-260ENST00000637578 CERS6Q6ZMG9 384 aa18.76■□□□□ 0.59
CLN3-260ENST00000637578 SYDE1Q6ZW31 735 aaPredicted RBP18.76■□□□□ 0.59
CLN3-260ENST00000637578 VASH2Q86V25 355 aa18.76■□□□□ 0.59
CLN3-260ENST00000637578 SLC41A2Q96JW4 573 aa18.76■□□□□ 0.59
CLN3-260ENST00000637578 ATMQ13315 3056 aa18.75■□□□□ 0.59
CLN3-260ENST00000637578 TCRBV7S3A2A0A539 114 aa18.75■□□□□ 0.59
CLN3-260ENST00000637578 WT1P19544 449 aaPredicted RBP18.75■□□□□ 0.59
CLN3-260ENST00000637578 PDHA2P29803 388 aa18.75■□□□□ 0.59
CLN3-260ENST00000637578 CDK16Q00536 496 aa18.75■□□□□ 0.59
CLN3-260ENST00000637578 FAM92BQ6ZTR7 304 aa18.75■□□□□ 0.59
CLN3-260ENST00000637578 OR4L1Q8NH43 312 aa18.75■□□□□ 0.59
CLN3-260ENST00000637578 SLC39A7Q92504 469 aa18.75■□□□□ 0.59
CLN3-260ENST00000637578 CPT1BQ92523 772 aa18.75■□□□□ 0.59
CLN3-260ENST00000637578 UBXN4Q92575 508 aa18.75■□□□□ 0.59
CLN3-260ENST00000637578 CHRAC1Q9NRG0 131 aa18.75■□□□□ 0.59
CLN3-260ENST00000637578 AP3B1O00203 1094 aa18.74■□□□□ 0.59
CLN3-260ENST00000637578 LIN7AO14910 233 aaPredicted RBP18.74■□□□□ 0.59
CLN3-260ENST00000637578 RAD51CO43502 376 aa18.74■□□□□ 0.59
CLN3-260ENST00000637578 RASSF9O75901 435 aa18.74■□□□□ 0.59
CLN3-260ENST00000637578 TPSB2P20231 275 aa18.74■□□□□ 0.59
CLN3-260ENST00000637578 MAGEA6P43360 314 aa18.74■□□□□ 0.59
CLN3-260ENST00000637578 NPY2RP49146 381 aa18.74■□□□□ 0.59
CLN3-260ENST00000637578 SEPHS1P49903 392 aa18.74■□□□□ 0.59
CLN3-260ENST00000637578 ATP1A2P50993 1020 aa18.74■□□□□ 0.59
CLN3-260ENST00000637578 SH3BP2P78314 561 aa18.74■□□□□ 0.59
CLN3-260ENST00000637578 IL11RAQ14626 422 aa18.74■□□□□ 0.59
CLN3-260ENST00000637578 KCNJ11Q14654 390 aa18.74■□□□□ 0.59
CLN3-260ENST00000637578 PLCL1Q15111 1095 aa18.74■□□□□ 0.59
CLN3-260ENST00000637578 TPSAB1Q15661 275 aa18.74■□□□□ 0.59
CLN3-260ENST00000637578 ANKRD22Q5VYY1 191 aa18.74■□□□□ 0.59
CLN3-260ENST00000637578 MNS1Q8NEH6 495 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms