RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 PLTPP55058 493 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 GUCY2DQ02846 1103 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 CAV1Q03135 178 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 NFE2L1Q14494 772 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 SPANXN3Q5MJ09 141 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 ZNF470Q6ECI4 717 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 NEPROQ6NW34 567 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 OGFOD3Q6PK18 319 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 CENPUQ71F23 418 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 CCNJLQ8IV13 435 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 TRIM48Q8IWZ4 208 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 NAGSQ8N159 534 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 HM13Q8TCT9 377 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 LRRC39Q96DD0 335 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 TMEM74Q96NL1 305 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 STN1Q9H668 368 aaKnown RBP17.45■□□□□ 0.38
CLN3-247ENST00000636351 ZC3H7BQ9UGR2 993 aaKnown RBP17.45■□□□□ 0.38
CLN3-247ENST00000636351 LOXL2Q9Y4K0 774 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 PRSS21Q9Y6M0 314 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 PIEZO2Q9H5I5 2752 aa17.45■□□□□ 0.38
CLN3-247ENST00000636351 ZCWPW2A0A1B0GU75 182 aa17.44■□□□□ 0.38
CLN3-247ENST00000636351 ESPNB1AK53 854 aa17.44■□□□□ 0.38
CLN3-247ENST00000636351 TP73O15350 636 aa17.44■□□□□ 0.38
CLN3-247ENST00000636351 SGTAO43765 313 aa17.44■□□□□ 0.38
CLN3-247ENST00000636351 SLC28A2O43868 658 aa17.44■□□□□ 0.38
CLN3-247ENST00000636351 KCNJ13O60928 360 aa17.44■□□□□ 0.38
CLN3-247ENST00000636351 EML2O95834 649 aa17.44■□□□□ 0.38
CLN3-247ENST00000636351 FTH1P02794 183 aa17.44■□□□□ 0.38
CLN3-247ENST00000636351 F3P13726 295 aa17.44■□□□□ 0.38
CLN3-247ENST00000636351 OGNP20774 298 aaKnown RBP17.44■□□□□ 0.38
CLN3-247ENST00000636351 RPL10P27635 214 aaKnown RBP17.44■□□□□ 0.38
CLN3-247ENST00000636351 HALP42357 657 aa17.44■□□□□ 0.38
CLN3-247ENST00000636351 PPM1FP49593 454 aaPredicted RBP17.44■□□□□ 0.38
CLN3-247ENST00000636351 SRSF6Q13247 344 aaKnown RBP17.44■□□□□ 0.38
CLN3-247ENST00000636351 HLTFQ14527 1009 aaKnown RBP eCLIP17.44■□□□□ 0.38
CLN3-247ENST00000636351 SYTL3Q4VX76 610 aa17.44■□□□□ 0.38
CLN3-247ENST00000636351 RNF187Q5TA31 235 aaPredicted RBP17.44■□□□□ 0.38
CLN3-247ENST00000636351 PTRHD1Q6GMV3 140 aaKnown RBP17.44■□□□□ 0.38
CLN3-247ENST00000636351 FAM83HQ6ZRV2 1179 aaPredicted RBP17.44■□□□□ 0.38
CLN3-247ENST00000636351 KCNMB4Q86W47 210 aa17.44■□□□□ 0.38
CLN3-247ENST00000636351 CCDC25Q86WR0 208 aa17.44■□□□□ 0.38
CLN3-247ENST00000636351 IGDCC3Q8IVU1 814 aa17.44■□□□□ 0.38
CLN3-247ENST00000636351 OR2L2Q8NH16 312 aa17.44■□□□□ 0.38
CLN3-247ENST00000636351 SLC37A2Q8TED4 501 aa17.44■□□□□ 0.38
CLN3-247ENST00000636351 LINC00615Q96LM1 132 aaPredicted RBP17.44■□□□□ 0.38
CLN3-247ENST00000636351 CCM2Q9BSQ5 444 aa17.44■□□□□ 0.38
CLN3-247ENST00000636351 FAM167BQ9BTA0 163 aa17.44■□□□□ 0.38
CLN3-247ENST00000636351 TSSK1BQ9BXA7 367 aa17.44■□□□□ 0.38
CLN3-247ENST00000636351 SAYSD1Q9NPB0 183 aa17.44■□□□□ 0.38
CLN3-247ENST00000636351 ACSL6Q9UKU0 697 aa17.44■□□□□ 0.38
CLN3-247ENST00000636351 RNF215Q9Y6U7 377 aa17.44■□□□□ 0.38
CLN3-247ENST00000636351 KIR2DS5A0A0G2JLQ3 304 aa17.43■□□□□ 0.38
CLN3-247ENST00000636351 A0A0G2JNG1 304 aa17.43■□□□□ 0.38
CLN3-247ENST00000636351 KLHL33A6NCF5 533 aa17.43■□□□□ 0.38
CLN3-247ENST00000636351 KIR2DS3K7RE56 304 aa17.43■□□□□ 0.38
CLN3-247ENST00000636351 PRMT5O14744 637 aaPredicted RBP17.43■□□□□ 0.38
CLN3-247ENST00000636351 GLB1P16278 677 aa17.43■□□□□ 0.38
CLN3-247ENST00000636351 ITGB6P18564 788 aa17.43■□□□□ 0.38
CLN3-247ENST00000636351 ITIH1P19827 911 aa17.43■□□□□ 0.38
CLN3-247ENST00000636351 EIF3BP55884 814 aaKnown RBP17.43■□□□□ 0.38
CLN3-247ENST00000636351 DMPKQ09013 629 aa17.43■□□□□ 0.38
CLN3-247ENST00000636351 KIR2DS5Q14953 304 aa17.43■□□□□ 0.38
CLN3-247ENST00000636351 FASTKD3Q14CZ7 662 aaKnown RBP17.43■□□□□ 0.38
CLN3-247ENST00000636351 SLC9B2Q86UD5 537 aa17.43■□□□□ 0.38
CLN3-247ENST00000636351 CFAP206Q8IYR0 622 aa17.43■□□□□ 0.38
CLN3-247ENST00000636351 ZBED8Q8IZ13 594 aa17.43■□□□□ 0.38
CLN3-247ENST00000636351 SFRP1Q8N474 314 aa17.43■□□□□ 0.38
CLN3-247ENST00000636351 FBXO36Q8NEA4 188 aa17.43■□□□□ 0.38
CLN3-247ENST00000636351 GABPB2Q8TAK5 448 aaPredicted RBP17.43■□□□□ 0.38
CLN3-247ENST00000636351 FBXO25Q8TCJ0 367 aa17.43■□□□□ 0.38
CLN3-247ENST00000636351 CALML6Q8TD86 181 aa17.43■□□□□ 0.38
CLN3-247ENST00000636351 ART4Q93070 314 aa17.43■□□□□ 0.38
CLN3-247ENST00000636351 ZMYND15Q9H091 742 aa17.43■□□□□ 0.38
CLN3-247ENST00000636351 PPANQ9NQ55 473 aaKnown RBP17.43■□□□□ 0.38
CLN3-247ENST00000636351 LRIT1Q9P2V4 623 aa17.43■□□□□ 0.38
CLN3-247ENST00000636351 GNPTGQ9UJJ9 305 aa17.43■□□□□ 0.38
CLN3-247ENST00000636351 PSMD13Q9UNM6 376 aa17.43■□□□□ 0.38
CLN3-247ENST00000636351 FAM169AQ9Y6X4 670 aa17.43■□□□□ 0.38
CLN3-247ENST00000636351 MYO18BQ8IUG5 2567 aa17.42■□□□□ 0.38
CLN3-247ENST00000636351 A6NCN8 305 aa17.42■□□□□ 0.38
CLN3-247ENST00000636351 OR5K4A6NMS3 321 aa17.42■□□□□ 0.38
CLN3-247ENST00000636351 NUDT21O43809 227 aaKnown RBP17.42■□□□□ 0.38
CLN3-247ENST00000636351 ZNF500O60304 480 aaPredicted RBP17.42■□□□□ 0.38
CLN3-247ENST00000636351 SLC35G4P0C7Q5 338 aa17.42■□□□□ 0.38
CLN3-247ENST00000636351 LIPCP11150 499 aa17.42■□□□□ 0.38
CLN3-247ENST00000636351 DEKP35659 375 aaKnown RBP17.42■□□□□ 0.38
CLN3-247ENST00000636351 HHEXQ03014 270 aa17.42■□□□□ 0.38
CLN3-247ENST00000636351 BOP1Q14137 746 aaKnown RBP17.42■□□□□ 0.38
CLN3-247ENST00000636351 TRADDQ15628 312 aa17.42■□□□□ 0.38
CLN3-247ENST00000636351 TYSND1Q2T9J0 566 aa17.42■□□□□ 0.38
CLN3-247ENST00000636351 GLE1Q53GS7 698 aaKnown RBP17.42■□□□□ 0.38
CLN3-247ENST00000636351 ZNF449Q6P9G9 518 aa17.42■□□□□ 0.38
CLN3-247ENST00000636351 IYDQ6PHW0 289 aa17.42■□□□□ 0.38
CLN3-247ENST00000636351 UNC5AQ6ZN44 842 aa17.42■□□□□ 0.38
CLN3-247ENST00000636351 CAPN12Q6ZSI9 719 aa17.42■□□□□ 0.38
CLN3-247ENST00000636351 USP53Q70EK8 1073 aa17.42■□□□□ 0.38
CLN3-247ENST00000636351 PRICKLE2Q7Z3G6 844 aa17.42■□□□□ 0.38
CLN3-247ENST00000636351 SPRED1Q7Z699 444 aa17.42■□□□□ 0.38
CLN3-247ENST00000636351 CILP2Q8IUL8 1156 aa17.42■□□□□ 0.38
CLN3-247ENST00000636351 EXD3Q8N9H8 876 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms