RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 PLGRKTQ9HBL7 147 aa12.54□□□□□ -0.4
LINC00540-203ENST00000631321 GALNT8Q9NY28 637 aa12.54□□□□□ -0.4
LINC00540-203ENST00000631321 V9GYQ6 96 aa12.54□□□□□ -0.4
LINC00540-203ENST00000631321 H3BMQ9 156 aa12.54□□□□□ -0.4
LINC00540-203ENST00000631321 SLC28A1O00337 649 aa12.54□□□□□ -0.4
LINC00540-203ENST00000631321 GFRA2O00451 464 aa12.54□□□□□ -0.4
LINC00540-203ENST00000631321 HOXA2O43364 376 aa12.54□□□□□ -0.4
LINC00540-203ENST00000631321 RGS14O43566 566 aa12.54□□□□□ -0.4
LINC00540-203ENST00000631321 DFNA5O60443 496 aa12.54□□□□□ -0.4
LINC00540-203ENST00000631321 ATE1O95260 518 aa12.54□□□□□ -0.4
LINC00540-203ENST00000631321 THRBP10828 461 aa12.54□□□□□ -0.4
LINC00540-203ENST00000631321 ARL1P40616 181 aaPredicted RBP12.54□□□□□ -0.4
LINC00540-203ENST00000631321 HSPA7P48741 367 aa12.54□□□□□ -0.4
LINC00540-203ENST00000631321 CHRNB3Q05901 458 aa12.54□□□□□ -0.4
LINC00540-203ENST00000631321 HABP4Q5JVS0 413 aaKnown RBP12.54□□□□□ -0.4
LINC00540-203ENST00000631321 TMEM214Q6NUQ4 689 aaKnown RBP12.54□□□□□ -0.4
LINC00540-203ENST00000631321 ZNF548Q8NEK5 533 aaPredicted RBP12.54□□□□□ -0.4
LINC00540-203ENST00000631321 LKAAEAR1Q8TD35 194 aa12.54□□□□□ -0.4
LINC00540-203ENST00000631321 MYO19Q96H55 970 aa12.54□□□□□ -0.4
LINC00540-203ENST00000631321 COG8Q96MW5 612 aa12.54□□□□□ -0.4
LINC00540-203ENST00000631321 HBEGFQ99075 208 aa12.54□□□□□ -0.4
LINC00540-203ENST00000631321 ZBTB18Q99592 522 aa12.54□□□□□ -0.4
LINC00540-203ENST00000631321 FEM1AQ9BSK4 669 aa12.54□□□□□ -0.4
LINC00540-203ENST00000631321 UGT2B28Q9BY64 529 aa12.54□□□□□ -0.4
LINC00540-203ENST00000631321 FAM126AQ9BYI3 521 aaPredicted RBP12.54□□□□□ -0.4
LINC00540-203ENST00000631321 RNF186Q9NXI6 227 aa12.54□□□□□ -0.4
LINC00540-203ENST00000631321 VAPAQ9P0L0 249 aa12.54□□□□□ -0.4
LINC00540-203ENST00000631321 IFT80Q9P2H3 777 aaPredicted RBP12.54□□□□□ -0.4
LINC00540-203ENST00000631321 EIF3LQ9Y262 564 aaKnown RBP12.54□□□□□ -0.4
LINC00540-203ENST00000631321 AP3M1Q9Y2T2 418 aa12.54□□□□□ -0.4
LINC00540-203ENST00000631321 A0A1W2PQ45 241 aaPredicted RBP12.53□□□□□ -0.4
LINC00540-203ENST00000631321 A0A1W2PQY0 241 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 KATNA1O75449 491 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 PRAMEF1O95521 474 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 SLC2A4P14672 509 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 DGKAP23743 735 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 CA5AP35218 305 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 AAK1Q2M2I8 961 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 ATXN7L2Q5T6C5 722 aaPredicted RBP12.53□□□□□ -0.4
LINC00540-203ENST00000631321 SULT1C3Q6IMI6 304 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 FAM43BQ6ZT52 329 aaPredicted RBP12.53□□□□□ -0.4
LINC00540-203ENST00000631321 SNX20Q7Z614 316 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 OR2T12Q8NG77 320 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 NUDT8Q8WV74 236 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 ALG14Q96F25 216 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 MUS81Q96NY9 551 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 CD244Q9BZW8 370 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 CARS2Q9HA77 564 aaKnown RBP12.53□□□□□ -0.4
LINC00540-203ENST00000631321 AFF4Q9UHB7 1163 aaKnown RBP12.53□□□□□ -0.4
LINC00540-203ENST00000631321 TRPS1Q9UHF7 1281 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 VPS51Q9UID3 782 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 LRFN2Q9ULH4 789 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 FCF1Q9Y324 198 aaKnown RBP12.53□□□□□ -0.4
LINC00540-203ENST00000631321 GMNNO75496 209 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 SEC24AO95486 1093 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 ALPIP09923 528 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 IRF1P10914 325 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 TCF3P15923 654 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 CTPS1P17812 591 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 AKT1P31749 480 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 SHMT2P34897 504 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 OR1D2P34982 312 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 STT3AP46977 705 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 RPL38P63173 70 aaKnown RBP12.53□□□□□ -0.4
LINC00540-203ENST00000631321 NFATC2Q13469 925 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 PLCL1Q15111 1095 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 OTUD3Q5T2D3 398 aaPredicted RBP12.53□□□□□ -0.4
LINC00540-203ENST00000631321 GPRC6AQ5T6X5 926 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 LYPLAL1Q5VWZ2 237 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 FAM117BQ6P1L5 589 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 FAM151BQ6UXP7 276 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 MACC1Q6ZN28 852 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 NECAB2Q7Z6G3 386 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 MSRB3Q8IXL7 192 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 OR13F1Q8NGS4 319 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 RHBDF1Q96CC6 855 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 AURKBQ96GD4 344 aaPredicted RBP12.53□□□□□ -0.4
LINC00540-203ENST00000631321 TRMT2BQ96GJ1 504 aaKnown RBP12.53□□□□□ -0.4
LINC00540-203ENST00000631321 PHF12Q96QT6 1004 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 C17orf80Q9BSJ5 609 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 NTMT1Q9BV86 223 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 BOCQ9BWV1 1114 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 RDH14Q9HBH5 336 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 USE1Q9NZ43 259 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 DNAJB9Q9UBS3 223 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 ZMYM5Q9UJ78 669 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 PRSS21Q9Y6M0 314 aa12.53□□□□□ -0.4
LINC00540-203ENST00000631321 TRBV5-3A0A0A0MS03 114 aa12.52□□□□□ -0.4
LINC00540-203ENST00000631321 TBL1XO60907 577 aa12.52□□□□□ -0.4
LINC00540-203ENST00000631321 ARHGEF15O94989 841 aa12.52□□□□□ -0.4
LINC00540-203ENST00000631321 IL6P05231 212 aa12.52□□□□□ -0.4
LINC00540-203ENST00000631321 RPL17P18621 184 aaKnown RBP12.52□□□□□ -0.4
LINC00540-203ENST00000631321 ITGALP20701 1170 aa12.52□□□□□ -0.4
LINC00540-203ENST00000631321 MTHFRP42898 656 aa12.52□□□□□ -0.4
LINC00540-203ENST00000631321 GALK1P51570 392 aa12.52□□□□□ -0.4
LINC00540-203ENST00000631321 CYP4F3Q08477 520 aa12.52□□□□□ -0.4
LINC00540-203ENST00000631321 CDKN3Q16667 212 aa12.52□□□□□ -0.4
LINC00540-203ENST00000631321 PHKG1Q16816 387 aa12.52□□□□□ -0.4
LINC00540-203ENST00000631321 GPR107Q5VW38 600 aa12.52□□□□□ -0.4
LINC00540-203ENST00000631321 KLHL35Q6PF15 583 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms