RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 UTP11Q9Y3A2 253 aaKnown RBP20.23■□□□□ 0.83
CLN3-240ENST00000631023 FREM2Q5SZK8 3169 aa20.22■□□□□ 0.83
CLN3-240ENST00000631023 PRAMEF33A0A0G2JMD5 474 aa20.22■□□□□ 0.83
CLN3-240ENST00000631023 KPNA5O15131 536 aa20.22■□□□□ 0.83
CLN3-240ENST00000631023 RBMS1P29558 406 aaKnown RBP20.22■□□□□ 0.83
CLN3-240ENST00000631023 PDHA2P29803 388 aa20.22■□□□□ 0.83
CLN3-240ENST00000631023 CSF2RBP32927 897 aa20.22■□□□□ 0.83
CLN3-240ENST00000631023 EIF3BP55884 814 aaKnown RBP20.22■□□□□ 0.83
CLN3-240ENST00000631023 CFHR1Q03591 330 aa20.22■□□□□ 0.83
CLN3-240ENST00000631023 BRD3Q15059 726 aa20.22■□□□□ 0.83
CLN3-240ENST00000631023 PLCL1Q15111 1095 aa20.22■□□□□ 0.83
CLN3-240ENST00000631023 ASZ1Q8WWH4 475 aa20.22■□□□□ 0.83
CLN3-240ENST00000631023 RAB17Q9H0T7 212 aa20.22■□□□□ 0.83
CLN3-240ENST00000631023 P2RY12Q9H244 342 aa20.22■□□□□ 0.83
CLN3-240ENST00000631023 INTS10Q9NVR2 710 aaKnown RBP20.22■□□□□ 0.83
CLN3-240ENST00000631023 WHRNQ9P202 907 aa20.22■□□□□ 0.83
CLN3-240ENST00000631023 ASPMQ8IZT6 3477 aa20.22■□□□□ 0.83
CLN3-240ENST00000631023 H3BMM5 538 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 PLD2O14939 933 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 HGSO14964 777 aaPredicted RBP20.21■□□□□ 0.83
CLN3-240ENST00000631023 BRINP1O60477 761 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 CAPNS1P04632 268 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 APOA4P06727 396 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 TYRP1P17643 537 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 ITGB6P18564 788 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 ADARP55265 1226 aaKnown RBP20.21■□□□□ 0.83
CLN3-240ENST00000631023 MRPS25P82663 173 aaKnown RBP20.21■□□□□ 0.83
CLN3-240ENST00000631023 MSS51Q4VC12 460 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 SPANXN3Q5MJ09 141 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 ZNF470Q6ECI4 717 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 FOXR1Q6PIV2 292 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 PDZD3Q86UT5 571 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 KIF18AQ8NI77 898 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 TFGQ92734 400 aaPredicted RBP20.21■□□□□ 0.83
CLN3-240ENST00000631023 CCDC74BQ96LY2 380 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 FERD3LQ96RJ6 166 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 MVB12BQ9H7P6 319 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 IL1RAPL1Q9NZN1 696 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 ANKRD11Q6UB99 2663 aaPredicted RBP20.21■□□□□ 0.83
CLN3-240ENST00000631023 SLC5A10A0PJK1 596 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 DXOO77932 396 aaKnown RBP20.21■□□□□ 0.83
CLN3-240ENST00000631023 ESR1P03372 595 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 THRAP10827 490 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 CCR7P32248 378 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 MLLT3P42568 568 aaPredicted RBP20.21■□□□□ 0.83
CLN3-240ENST00000631023 CRYMQ14894 314 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 TMED2Q15363 201 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 DUS1LQ6P1R4 473 aaKnown RBP20.21■□□□□ 0.83
CLN3-240ENST00000631023 IGF2-ASQ6U949 168 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 CENPUQ71F23 418 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 LPGAT1Q92604 370 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 FAM167BQ9BTA0 163 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 DPH5Q9H2P9 285 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 KIR3DX1Q9H7L2 352 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 PDP2Q9P2J9 529 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 SLC24A2Q9UI40 661 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 CRYL1Q9Y2S2 319 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 LOXL2Q9Y4K0 774 aa20.21■□□□□ 0.83
CLN3-240ENST00000631023 DMXL2Q8TDJ6 3036 aa20.2■□□□□ 0.82
CLN3-240ENST00000631023 IQCF5A8MTL0 148 aa20.2■□□□□ 0.82
CLN3-240ENST00000631023 BANF1O75531 89 aa20.2■□□□□ 0.82
CLN3-240ENST00000631023 JMJD7P0C870 316 aa20.2■□□□□ 0.82
CLN3-240ENST00000631023 MPSTP25325 297 aa20.2■□□□□ 0.82
CLN3-240ENST00000631023 FMO4P31512 558 aa20.2■□□□□ 0.82
CLN3-240ENST00000631023 CSTF2P33240 577 aaKnown RBP eCLIP20.2■□□□□ 0.82
CLN3-240ENST00000631023 ELK3P41970 407 aa20.2■□□□□ 0.82
CLN3-240ENST00000631023 HSPA14Q0VDF9 509 aa20.2■□□□□ 0.82
CLN3-240ENST00000631023 SNAP47Q5SQN1 464 aa20.2■□□□□ 0.82
CLN3-240ENST00000631023 DUPD1Q68J44 220 aa20.2■□□□□ 0.82
CLN3-240ENST00000631023 KCNMB4Q86W47 210 aa20.2■□□□□ 0.82
CLN3-240ENST00000631023 KRT222Q8N1A0 295 aa20.2■□□□□ 0.82
CLN3-240ENST00000631023 MNS1Q8NEH6 495 aa20.2■□□□□ 0.82
CLN3-240ENST00000631023 ACVR1CQ8NER5 493 aa20.2■□□□□ 0.82
CLN3-240ENST00000631023 GSDMBQ8TAX9 411 aa20.2■□□□□ 0.82
CLN3-240ENST00000631023 ZNF578Q96N58 590 aaPredicted RBP20.2■□□□□ 0.82
CLN3-240ENST00000631023 SLC46A1Q96NT5 459 aa20.2■□□□□ 0.82
CLN3-240ENST00000631023 OGFRQ9NZT2 677 aa20.2■□□□□ 0.82
CLN3-240ENST00000631023 TMEM9Q9P0T7 183 aa20.2■□□□□ 0.82
CLN3-240ENST00000631023 ZC3H7BQ9UGR2 993 aaKnown RBP20.2■□□□□ 0.82
CLN3-240ENST00000631023 EPG5Q9HCE0 2579 aa20.19■□□□□ 0.82
CLN3-240ENST00000631023 A0A1W2PNU3 283 aaPredicted RBP20.19■□□□□ 0.82
CLN3-240ENST00000631023 TP73O15350 636 aa20.19■□□□□ 0.82
CLN3-240ENST00000631023 S1PR4O95977 384 aa20.19■□□□□ 0.82
CLN3-240ENST00000631023 AOAHP28039 575 aa20.19■□□□□ 0.82
CLN3-240ENST00000631023 CAPZBP47756 277 aa20.19■□□□□ 0.82
CLN3-240ENST00000631023 ERVPABLB-1P60509 514 aa20.19■□□□□ 0.82
CLN3-240ENST00000631023 ST3GAL2Q16842 350 aa20.19■□□□□ 0.82
CLN3-240ENST00000631023 HSP90AA5PQ58FG0 334 aa20.19■□□□□ 0.82
CLN3-240ENST00000631023 OTOAQ7RTW8 1153 aa20.19■□□□□ 0.82
CLN3-240ENST00000631023 PROSER1Q86XN7 944 aa20.19■□□□□ 0.82
CLN3-240ENST00000631023 AGBL5Q8NDL9 886 aa20.19■□□□□ 0.82
CLN3-240ENST00000631023 RCBTB1Q8NDN9 531 aa20.19■□□□□ 0.82
CLN3-240ENST00000631023 ZDHHC12Q96GR4 267 aa20.19■□□□□ 0.82
CLN3-240ENST00000631023 PWWP2AQ96N64 755 aa20.19■□□□□ 0.82
CLN3-240ENST00000631023 BIRC8Q96P09 236 aa20.19■□□□□ 0.82
CLN3-240ENST00000631023 RAB33BQ9H082 229 aa20.19■□□□□ 0.82
CLN3-240ENST00000631023 CCDC68Q9H2F9 335 aa20.19■□□□□ 0.82
CLN3-240ENST00000631023 THSD1Q9NS62 852 aa20.19■□□□□ 0.82
CLN3-240ENST00000631023 ASF1AQ9Y294 204 aa20.19■□□□□ 0.82
CLN3-240ENST00000631023 TEX264Q9Y6I9 313 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms