RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 GPR52Q9Y2T5 361 aa2.38□□□□□ -2.03
SCN1A-208ENST00000625916 RIPK3Q9Y572 518 aa2.38□□□□□ -2.03
SCN1A-208ENST00000625916 A0A1W2PRB8 838 aa2.37□□□□□ -2.03
SCN1A-208ENST00000625916 MAGEC1O60732 1142 aa2.37□□□□□ -2.03
SCN1A-208ENST00000625916 IPO7O95373 1038 aaKnown RBP2.37□□□□□ -2.03
SCN1A-208ENST00000625916 F9P00740 461 aa2.37□□□□□ -2.03
SCN1A-208ENST00000625916 EFNA1P20827 205 aaPredicted RBP2.37□□□□□ -2.03
SCN1A-208ENST00000625916 OPRL1P41146 370 aa2.37□□□□□ -2.03
SCN1A-208ENST00000625916 HARS2P49590 506 aaKnown RBP2.37□□□□□ -2.03
SCN1A-208ENST00000625916 GSCP56915 257 aaPredicted RBP2.37□□□□□ -2.03
SCN1A-208ENST00000625916 TRA2BP62995 288 aaKnown RBP2.37□□□□□ -2.03
SCN1A-208ENST00000625916 OLR1P78380 273 aa2.37□□□□□ -2.03
SCN1A-208ENST00000625916 HIGD2BQ4VC39 106 aa2.37□□□□□ -2.03
SCN1A-208ENST00000625916 TPRG1Q6ZUI0 275 aa2.37□□□□□ -2.03
SCN1A-208ENST00000625916 RNF168Q8IYW5 571 aaPredicted RBP2.37□□□□□ -2.03
SCN1A-208ENST00000625916 CNTROBQ8N137 903 aa2.37□□□□□ -2.03
SCN1A-208ENST00000625916 Q8NBF4 154 aa2.37□□□□□ -2.03
SCN1A-208ENST00000625916 ZNF519Q8TB69 540 aa2.37□□□□□ -2.03
SCN1A-208ENST00000625916 DAZLQ92904 295 aaKnown RBP2.37□□□□□ -2.03
SCN1A-208ENST00000625916 FAM149B1Q96BN6 582 aa2.37□□□□□ -2.03
SCN1A-208ENST00000625916 ARSGQ96EG1 525 aa2.37□□□□□ -2.03
SCN1A-208ENST00000625916 PIP5K1AQ99755 562 aa2.37□□□□□ -2.03
SCN1A-208ENST00000625916 KAT14Q9H8E8 782 aa2.37□□□□□ -2.03
SCN1A-208ENST00000625916 SPHK2Q9NRA0 654 aa2.37□□□□□ -2.03
SCN1A-208ENST00000625916 ABCB10Q9NRK6 738 aa2.37□□□□□ -2.03
SCN1A-208ENST00000625916 PANK4Q9NVE7 773 aa2.37□□□□□ -2.03
SCN1A-208ENST00000625916 FBXL17Q9UF56 701 aa2.37□□□□□ -2.03
SCN1A-208ENST00000625916 LAS1LQ9Y4W2 734 aaKnown RBP2.37□□□□□ -2.03
SCN1A-208ENST00000625916 ZNF646O15015 1829 aaPredicted RBP2.37□□□□□ -2.03
SCN1A-208ENST00000625916 LOC101059948A0A1B0GTJ6 334 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 CCDC196A0A1B0GTZ2 297 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 A0A1W2PPR1 153 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 MED19A0JLT2 244 aaPredicted RBP2.36□□□□□ -2.03
SCN1A-208ENST00000625916 MSGN1A6NI15 193 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 SMAD9O15198 467 aaKnown RBP2.36□□□□□ -2.03
SCN1A-208ENST00000625916 TMCC2O75069 709 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 NDUFS3O75489 264 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 PRKRAO75569 313 aaKnown RBP2.36□□□□□ -2.03
SCN1A-208ENST00000625916 SEC14L2O76054 403 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 GPIP06744 558 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 POLBP06746 335 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 ABCD3P28288 659 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 PAX9P55771 341 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 TFAP4Q01664 338 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 PRKCZQ05513 592 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 CSTF3Q12996 717 aaKnown RBP2.36□□□□□ -2.03
SCN1A-208ENST00000625916 GAGE2BQ13066 116 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 RNF212Q495C1 297 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 GAGE2EQ4V326 116 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 SEL1L3Q68CR1 1132 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 ADALQ6DHV7 355 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 GAGE2AQ6NT46 116 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 Q6ZRP5 223 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 GALNT13Q8IUC8 556 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 CEP97Q8IW35 865 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 MARVELD2Q8N4S9 558 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 MIPOL1Q8TD10 442 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 AZIN2Q96A70 460 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 CENPTQ96BT3 561 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 INTS12Q96CB8 462 aaKnown RBP2.36□□□□□ -2.03
SCN1A-208ENST00000625916 CYYR1Q96J86 154 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 UBXN10Q96LJ8 280 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 GAL3ST4Q96RP7 486 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 ATP13A3Q9H7F0 1226 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 SCPEP1Q9HB40 452 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 TRMT1Q9NXH9 659 aaKnown RBP2.36□□□□□ -2.03
SCN1A-208ENST00000625916 GAGE2DQ9UEU5 116 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 TSPYL4Q9UJ04 414 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 ANGPTL3Q9Y5C1 460 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 SPIN1Q9Y657 262 aaPredicted RBP2.36□□□□□ -2.03
SCN1A-208ENST00000625916 CYP46A1Q9Y6A2 500 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 MYH15Q9Y2K3 1946 aa2.36□□□□□ -2.03
SCN1A-208ENST00000625916 HPRP00739 348 aa2.35□□□□□ -2.03
SCN1A-208ENST00000625916 HIST1H2ABP04908 130 aa2.35□□□□□ -2.03
SCN1A-208ENST00000625916 HIST1H2ADP20671 130 aa2.35□□□□□ -2.03
SCN1A-208ENST00000625916 MSH2P43246 934 aa2.35□□□□□ -2.03
SCN1A-208ENST00000625916 CEBPZQ03701 1054 aaKnown RBP2.35□□□□□ -2.03
SCN1A-208ENST00000625916 TMEM115Q12893 351 aaPredicted RBP2.35□□□□□ -2.03
SCN1A-208ENST00000625916 PLA2G7Q13093 441 aa2.35□□□□□ -2.03
SCN1A-208ENST00000625916 CALCOCO2Q13137 446 aa2.35□□□□□ -2.03
SCN1A-208ENST00000625916 SOWAHCQ53LP3 525 aaPredicted RBP2.35□□□□□ -2.03
SCN1A-208ENST00000625916 SLC9C2Q5TAH2 1124 aa2.35□□□□□ -2.03
SCN1A-208ENST00000625916 FAM198BQ6UWH4 519 aa2.35□□□□□ -2.03
SCN1A-208ENST00000625916 HIST3H2AQ7L7L0 130 aa2.35□□□□□ -2.03
SCN1A-208ENST00000625916 Q8N7P7 452 aa2.35□□□□□ -2.03
SCN1A-208ENST00000625916 C17orf47Q8NEP4 570 aa2.35□□□□□ -2.03
SCN1A-208ENST00000625916 OLIG1Q8TAK6 271 aa2.35□□□□□ -2.03
SCN1A-208ENST00000625916 SGCDQ92629 289 aa2.35□□□□□ -2.03
SCN1A-208ENST00000625916 SGK494Q96LW2 274 aa2.35□□□□□ -2.03
SCN1A-208ENST00000625916 ZNF582Q96NG8 517 aaPredicted RBP2.35□□□□□ -2.03
SCN1A-208ENST00000625916 NUDCD1Q96RS6 583 aa2.35□□□□□ -2.03
SCN1A-208ENST00000625916 MAP7D2Q96T17 732 aa2.35□□□□□ -2.03
SCN1A-208ENST00000625916 SLA2Q9H6Q3 261 aa2.35□□□□□ -2.03
SCN1A-208ENST00000625916 NAALADL1Q9UQQ1 740 aa2.35□□□□□ -2.03
SCN1A-208ENST00000625916 A0A1W2PN81 502 aa2.34□□□□□ -2.03
SCN1A-208ENST00000625916 ELOVL7A1L3X0 281 aa2.34□□□□□ -2.03
SCN1A-208ENST00000625916 PHOX2AO14813 284 aa2.34□□□□□ -2.03
SCN1A-208ENST00000625916 PRKACGP22612 351 aa2.34□□□□□ -2.03
SCN1A-208ENST00000625916 EPHA8P29322 1005 aaPredicted RBP2.34□□□□□ -2.03
SCN1A-208ENST00000625916 CHRNA7P36544 502 aa2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms