RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 IPCEF1Q8WWN9 437 aaPredicted RBP10.66□□□□□ -0.7
UPF3A-212ENST00000619079 PIK3R3Q92569 461 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 SLC38A4Q969I6 547 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 NT5C3BQ969T7 300 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 NTAN1Q96AB6 310 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 NACC2Q96BF6 587 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 PCYT2Q99447 389 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 CCDC32Q9BV29 185 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 KATNAL1Q9BW62 490 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 TREX1Q9NSU2 369 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 GIMAP2Q9UG22 337 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 NUDT5Q9UKK9 219 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 ZSCAN5BA6NJL1 495 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 CRCPO75575 148 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 JCHAINP01591 159 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 YES1P07947 543 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 PRR35P0CG20 571 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 UBL4AP11441 157 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 CES1P23141 567 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 CD6P30203 668 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 ATN1P54259 1190 aaPredicted RBP10.66□□□□□ -0.7
UPF3A-212ENST00000619079 DIO3P55073 304 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 TSPY1Q01534 308 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 MBTD1Q05BQ5 628 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 SCAPQ12770 1279 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 SPANXN2Q5MJ10 180 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 BNIPLQ7Z465 357 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 NECAB2Q7Z6G3 386 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 B3GNT8Q7Z7M8 397 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 ISCA2Q86U28 154 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 RALGPS2Q86X27 583 aaPredicted RBP10.66□□□□□ -0.7
UPF3A-212ENST00000619079 SDR16C5Q8N3Y7 309 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 PPP1R13LQ8WUF5 828 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 TMCO6Q96DC7 493 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 SLC47A1Q96FL8 570 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 PAWRQ96IZ0 340 aaKnown RBP10.66□□□□□ -0.7
UPF3A-212ENST00000619079 NPY6RQ99463 290 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 MRPL45Q9BRJ2 306 aaKnown RBP10.66□□□□□ -0.7
UPF3A-212ENST00000619079 TSEN34Q9BSV6 310 aaKnown RBP10.66□□□□□ -0.7
UPF3A-212ENST00000619079 NUSAP1Q9BXS6 441 aaKnown RBP10.66□□□□□ -0.7
UPF3A-212ENST00000619079 ITPAQ9BY32 194 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 NUAK2Q9H093 628 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 GIMAP4Q9NUV9 329 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 INTS7Q9NVH2 962 aaKnown RBP10.66□□□□□ -0.7
UPF3A-212ENST00000619079 ADPRHL2Q9NX46 363 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 ERAP1Q9NZ08 941 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 PCDHGB6Q9Y5F9 930 aa10.66□□□□□ -0.7
UPF3A-212ENST00000619079 FNDC1Q4ZHG4 1894 aaPredicted RBP10.65□□□□□ -0.7
UPF3A-212ENST00000619079 A0A1W2PQ45 241 aaPredicted RBP10.65□□□□□ -0.7
UPF3A-212ENST00000619079 A0A1W2PQ67 120 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 A0A1W2PQY0 241 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 M0QYT0 321 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 IFRD1O00458 451 aaPredicted RBP10.65□□□□□ -0.7
UPF3A-212ENST00000619079 GSTA4O15217 222 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 AIREO43918 545 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 FADS2O95864 444 aaKnown RBP10.65□□□□□ -0.7
UPF3A-212ENST00000619079 LINC00032P0C843 101 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 PRKACBP22694 351 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 TGFBR2P37173 567 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 ETV6P41212 452 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 CDH13P55290 713 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 LCP2Q13094 533 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 PRKG2Q13237 762 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 SNAP47Q5SQN1 464 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 HECTD2Q5U5R9 776 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 ZNF280DQ6N043 979 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 CES5AQ6NT32 575 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 GATAD2AQ86YP4 633 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 LRRC71Q8N4P6 559 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 CELF2-AS1Q8N7Q2 184 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 C7orf31Q8N865 590 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 OR8J3Q8NGG0 315 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 OR52E4Q8NGH9 312 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 WNT8BQ93098 351 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 EGLN2Q96KS0 407 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 TSGA13Q96PP4 275 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 GON7Q9BXV9 100 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 NFKBIZQ9BYH8 718 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 REXO4Q9GZR2 422 aaKnown RBP10.65□□□□□ -0.7
UPF3A-212ENST00000619079 TUBB1Q9H4B7 451 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 RUBCNLQ9H714 662 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 ACTR8Q9H981 624 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 LTB4R2Q9NPC1 389 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 RPRD1BQ9NQG5 326 aaKnown RBP10.65□□□□□ -0.7
UPF3A-212ENST00000619079 ENTPD7Q9NQZ7 604 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 CDH9Q9ULB4 789 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 BTBD3Q9Y2F9 522 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 PTGDR2Q9Y5Y4 395 aa10.65□□□□□ -0.7
UPF3A-212ENST00000619079 OR2A25A4D2G3 310 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 B8ZZF3 427 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 TEX28O15482 410 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 CAPN5O15484 640 aaPredicted RBP10.65□□□□□ -0.71
UPF3A-212ENST00000619079 MT-ND2P03891 347 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 HOXB8P17481 243 aaPredicted RBP10.65□□□□□ -0.71
UPF3A-212ENST00000619079 GTF2E2P29084 291 aaKnown RBP10.65□□□□□ -0.71
UPF3A-212ENST00000619079 ADRA1BP35368 520 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 DCTP40126 519 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 ZFP36L2P47974 494 aaKnown RBP10.65□□□□□ -0.71
UPF3A-212ENST00000619079 PPP3CCP48454 512 aa10.65□□□□□ -0.71
UPF3A-212ENST00000619079 MASP1P48740 699 aa10.65□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms