RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 ZNF382Q96SR6 550 aa12.19□□□□□ -0.46
CIITA-212ENST00000618207 HTATIP2Q9BUP3 242 aa12.19□□□□□ -0.46
CIITA-212ENST00000618207 CMTM6Q9NX76 183 aa12.19□□□□□ -0.46
CIITA-212ENST00000618207 RIMS3Q9UJD0 308 aa12.19□□□□□ -0.46
CIITA-212ENST00000618207 ITM2BQ9Y287 266 aa12.19□□□□□ -0.46
CIITA-212ENST00000618207 MYOCOSA0A1B0GUC4 107 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 ASPDHA6ND91 283 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 LOC730098B7Z3J9 87 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 FXYD1O00168 92 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 LINGO3P0C6S8 592 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 UQCRBP14927 111 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 CEBPBP17676 345 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 PEX19P40855 299 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 VIPR2P41587 438 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 NSG1P42857 185 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 RPIAP49247 311 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 RPL26P61254 145 aaKnown RBP12.18□□□□□ -0.46
CIITA-212ENST00000618207 HTRA4P83105 476 aaPredicted RBP12.18□□□□□ -0.46
CIITA-212ENST00000618207 C6orf52Q5T4I8 152 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 GDPD4Q6W3E5 623 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 RALGPS2Q86X27 583 aaPredicted RBP12.18□□□□□ -0.46
CIITA-212ENST00000618207 ITFG1Q8TB96 612 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 CLP1Q92989 425 aaKnown RBP12.18□□□□□ -0.46
CIITA-212ENST00000618207 LMLNQ96KR4 655 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 PPM1MQ96MI6 270 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 LRRC3BQ96PB8 259 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 TMEM79Q9BSE2 394 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 ATG10Q9H0Y0 220 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 VCXQ9H320 206 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 PIDD1Q9HB75 910 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 RIC8BQ9NVN3 520 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 AIG1Q9NVV5 245 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 C6orf203Q9P0P8 240 aaPredicted RBP12.18□□□□□ -0.46
CIITA-212ENST00000618207 SUCOQ9UBS9 1254 aaKnown RBP12.18□□□□□ -0.46
CIITA-212ENST00000618207 CD300AQ9UGN4 299 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 MTCL1Q9Y4B5 1905 aaKnown RBP12.18□□□□□ -0.46
CIITA-212ENST00000618207 MAGEA13PA6NCF6 341 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 ANTXRLA6NF34 631 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 AKAP10O43572 662 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 RSL1D1O76021 490 aaKnown RBP12.18□□□□□ -0.46
CIITA-212ENST00000618207 STAMBPO95630 424 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 SLC6A2P23975 617 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 NEK2P51955 445 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 POLR2JP52435 117 aaKnown RBP12.18□□□□□ -0.46
CIITA-212ENST00000618207 METAP1P53582 386 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 ERVK-8P63133 956 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 TRAF3Q13114 568 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 XKR7Q5GH72 579 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 MTX3Q5HYI7 312 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 OGFRL1Q5TC84 451 aaPredicted RBP12.18□□□□□ -0.46
CIITA-212ENST00000618207 TMC5Q6UXY8 1006 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 HSD11B1LQ7Z5J1 315 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 PROKR1Q8TCW9 393 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 RHBDF1Q96CC6 855 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 CIB1Q99828 191 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 WBP1LQ9NX94 342 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 ZDHHC3Q9NYG2 299 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 TMPRSS11EQ9UL52 423 aa12.18□□□□□ -0.46
CIITA-212ENST00000618207 DNAH14Q0VDD8 3507 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 TRBV5-4A0A0C4DH59 114 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 INPP4BO15327 924 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 CKMT2P17540 419 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 NELFEP18615 380 aaKnown RBP12.17□□□□□ -0.46
CIITA-212ENST00000618207 XPAP23025 273 aaPredicted RBP12.17□□□□□ -0.46
CIITA-212ENST00000618207 SPINT3P49223 89 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 ATP4BP51164 291 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 FPGSQ05932 587 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 CMPK2Q5EBM0 449 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 ZFP1Q6P2D0 407 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 FBXO46Q6PJ61 603 aaPredicted RBP12.17□□□□□ -0.46
CIITA-212ENST00000618207 CACUL1Q86Y37 369 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 RNF175Q8N4F7 328 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 RAD9AQ99638 391 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 C1QTNF3Q9BXJ4 246 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 PTBP2Q9UKA9 531 aaKnown RBP12.17□□□□□ -0.46
CIITA-212ENST00000618207 MRPS23Q9Y3D9 190 aaKnown RBP12.17□□□□□ -0.46
CIITA-212ENST00000618207 OARD1Q9Y530 152 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 TNPO3Q9Y5L0 923 aaKnown RBP12.17□□□□□ -0.46
CIITA-212ENST00000618207 PRSS51A0A1B0GVH4 220 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 PLK4O00444 970 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 PEX1O43933 1283 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 SH3BGRLO75368 114 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 OTCP00480 354 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 HLA-EP13747 358 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 RPS3P23396 243 aaKnown RBP eCLIP12.17□□□□□ -0.46
CIITA-212ENST00000618207 ITPKAP23677 461 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 PBLDP30039 288 aaPredicted RBP12.17□□□□□ -0.46
CIITA-212ENST00000618207 CSNK1DP48730 415 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 PCBP2Q15366 365 aaKnown RBP eCLIP12.17□□□□□ -0.46
CIITA-212ENST00000618207 TLR1Q15399 786 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 GSTA3Q16772 222 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 IMPG1Q17R60 797 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 GPR33Q49SQ1 333 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 TMEM240Q5SV17 173 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 UBE2R2Q712K3 238 aaPredicted RBP12.17□□□□□ -0.46
CIITA-212ENST00000618207 LILRA3Q8N6C8 439 aaPredicted RBP12.17□□□□□ -0.46
CIITA-212ENST00000618207 SLCO4A1Q96BD0 722 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 ECHDC3Q96DC8 303 aa12.17□□□□□ -0.46
CIITA-212ENST00000618207 PDLIM5Q96HC4 596 aaKnown RBP12.17□□□□□ -0.46
CIITA-212ENST00000618207 ARPC5LQ9BPX5 153 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms