RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 POMT2Q9UKY4 750 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 SRPK3Q9UPE1 567 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 ENTPD4Q9Y227 616 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 PCYT1BQ9Y5K3 369 aaPredicted RBP6.13□□□□□ -1.43
CUX1-220ENST00000607092 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.13□□□□□ -1.43
CUX1-220ENST00000607092 SHANK1Q9Y566 2161 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 HIVEP1P15822 2718 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 A0A0U1RQS6 177 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 A0A1B0GUH1 482 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 C17orf113A0A1B0GUU1 675 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 GSAPA4D1B5 854 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 LRRD1A4D1F6 860 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 OR6C74A6NCV1 312 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 C2orf81A6NN90 581 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 C2orf74A8MZ97 194 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 F8W8V4 182 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 ZNF185O15231 689 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 STX7O15400 261 aaKnown RBP6.12□□□□□ -1.43
CUX1-220ENST00000607092 MTX2O75431 263 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 SERPINC1P01008 464 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 TPM3P06753 285 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 MMP2P08253 660 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 PIM1P11309 404 aaPredicted RBP6.12□□□□□ -1.43
CUX1-220ENST00000607092 TCF4P15884 667 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 KDELR1P24390 212 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 RORAP35398 523 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 DEKP35659 375 aaKnown RBP6.12□□□□□ -1.43
CUX1-220ENST00000607092 ARCN1P48444 511 aaKnown RBP6.12□□□□□ -1.43
CUX1-220ENST00000607092 CD151P48509 253 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 ARSEP51690 589 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 RPS18P62269 152 aaKnown RBP6.12□□□□□ -1.43
CUX1-220ENST00000607092 ZBED6P86452 979 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 GBE1Q04446 702 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 CHAF1BQ13112 559 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 RPA4Q13156 261 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 MMRN1Q13201 1228 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 GPS2Q13227 327 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 MRPL49Q13405 166 aaKnown RBP6.12□□□□□ -1.43
CUX1-220ENST00000607092 LAMB3Q13751 1172 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 TFDP2Q14188 446 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 KCNAB1Q14722 419 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 CYP2A13Q16696 494 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 TEX44Q53QW1 395 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 DCAF10Q5QP82 559 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 PLEKHS1Q5SXH7 462 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 FNBP1LQ5T0N5 605 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 LRRC38Q5VT99 294 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 B3GNTL1Q67FW5 361 aaPredicted RBP6.12□□□□□ -1.43
CUX1-220ENST00000607092 SLC9A4Q6AI14 798 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 MTFR2Q6P444 385 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 TMEM220Q6QAJ8 160 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 APTXQ7Z2E3 356 aaKnown RBP6.12□□□□□ -1.43
CUX1-220ENST00000607092 MRGPREQ86SM8 312 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 GALNT16Q8N428 558 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 RBMXL3Q8N7X1 1067 aaKnown RBP6.12□□□□□ -1.43
CUX1-220ENST00000607092 CNTD1Q8N815 330 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 Q8NA96 180 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 OR2L2Q8NH16 312 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 HM13Q8TCT9 377 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 PROKR1Q8TCW9 393 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 UBE2Q2Q8WVN8 375 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 LCN9Q8WX39 176 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 MARVELD3Q96A59 401 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 PTERQ96BW5 349 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 ULK4Q96C45 1275 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 SNRNP40Q96DI7 357 aaKnown RBP6.12□□□□□ -1.43
CUX1-220ENST00000607092 LINC00615Q96LM1 132 aaPredicted RBP6.12□□□□□ -1.43
CUX1-220ENST00000607092 C12orf66Q96MD2 445 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 SMIM14Q96QK8 99 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 NUDT9Q9BW91 350 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 PITPNM3Q9BZ71 974 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 CHRNA10Q9GZZ6 450 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 SRMSQ9H3Y6 488 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 MVB12BQ9H7P6 319 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 GLOD4Q9HC38 313 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 ARFGAP3Q9NP61 516 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 IL26Q9NPH9 171 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 ATP13A2Q9NQ11 1180 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 LMBRD1Q9NUN5 540 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 PCMTD2Q9NV79 361 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 DDX56Q9NY93 547 aaKnown RBP6.12□□□□□ -1.43
CUX1-220ENST00000607092 TRIM10Q9UDY6 481 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 NDOR1Q9UHB4 597 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 ERRFI1Q9UJM3 462 aaPredicted RBP6.12□□□□□ -1.43
CUX1-220ENST00000607092 HEY1Q9Y5J3 304 aa6.12□□□□□ -1.43
CUX1-220ENST00000607092 A0A1B0GTH6 734 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 LOC285095A0A1B0GVY8 99 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 C5orf60A6NFR6 353 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 A6NL46 340 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 TMEM150CB9EJG8 249 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 QSOX1O00391 747 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 PMPCBO75439 489 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 ANXA9O76027 345 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 CD48P09326 243 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 PIRTP0C851 137 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 MYBL2P10244 700 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 SOX11P35716 441 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 GJC1P36383 396 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 ARHGAP25P42331 645 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 SLC1A1P43005 524 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms