RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 ZMIZ1Q9ULJ6 1067 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 CRYL1Q9Y2S2 319 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 LOXL2Q9Y4K0 774 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 TMEM8BA6NDV4 472 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 A8MU76 341 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 BHMG1C9JSJ3 638 aaPredicted RBP14.84□□□□□ -0.03
LIG1-219ENST00000600055 SMAPO00193 183 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 IFRD1O00458 451 aaPredicted RBP14.84□□□□□ -0.03
LIG1-219ENST00000600055 PLD2O14939 933 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 S1PR4O95977 384 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 THRAP10827 490 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 ITIH1P19827 911 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 OGNP20774 298 aaKnown RBP14.84□□□□□ -0.03
LIG1-219ENST00000600055 ARL4CP56559 192 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 CKAP4Q07065 602 aaKnown RBP14.84□□□□□ -0.03
LIG1-219ENST00000600055 KRT33BQ14525 404 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 HIF1AQ16665 826 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 SYTL3Q4VX76 610 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 DUPD1Q68J44 220 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 ZNF470Q6ECI4 717 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 ZNF449Q6P9G9 518 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 WDR74Q6RFH5 385 aaPredicted RBP14.84□□□□□ -0.03
LIG1-219ENST00000600055 PDZD3Q86UT5 571 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 VRK3Q8IV63 474 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 PDIK1LQ8N165 341 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 CFAP36Q96G28 342 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 BIRC8Q96P09 236 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 TCF12Q99081 682 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 DPYSL5Q9BPU6 564 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 FBXO6Q9NRD1 293 aaPredicted RBP14.84□□□□□ -0.03
LIG1-219ENST00000600055 IARS2Q9NSE4 1012 aaKnown RBP14.84□□□□□ -0.03
LIG1-219ENST00000600055 GRHL1Q9NZI5 618 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 DKK4Q9UBT3 224 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 SLC24A2Q9UI40 661 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 GNPTGQ9UJJ9 305 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 CHMP2BQ9UQN3 213 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 CDYLQ9Y232 598 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 ASPMQ8IZT6 3477 aa14.84□□□□□ -0.03
LIG1-219ENST00000600055 KNTC1P50748 2209 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 F8W8V4 182 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 TLX3O43711 291 aaPredicted RBP14.83□□□□□ -0.04
LIG1-219ENST00000600055 NIPSNAP2O75323 286 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 TNFSF15O95150 251 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 ERVK-10P10266 1014 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 AOAHP28039 575 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 ACADLP28330 430 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 ETV5P41161 510 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 SLC1A2P43004 574 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 LEPRP48357 1165 aaKnown RBP14.83□□□□□ -0.04
LIG1-219ENST00000600055 CD151P48509 253 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 PPP1CAP62136 330 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 MPP1Q00013 466 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 HSPA14Q0VDF9 509 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 FASTKD3Q14CZ7 662 aaKnown RBP14.83□□□□□ -0.04
LIG1-219ENST00000600055 PLCL1Q15111 1095 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 TRADDQ15628 312 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 WHAMMP3Q1A5X7 153 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 HSP90AA5PQ58FG0 334 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 RNF187Q5TA31 235 aaPredicted RBP14.83□□□□□ -0.04
LIG1-219ENST00000600055 KCNMB4Q86W47 210 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 LRRC6Q86X45 466 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 PROSER1Q86XN7 944 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 ANKMY2Q8IV38 441 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 SPNS2Q8IVW8 549 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 TFGQ92734 400 aaPredicted RBP14.83□□□□□ -0.04
LIG1-219ENST00000600055 TMEM159Q96B96 161 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 FAM136AQ96C01 138 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 SLC46A1Q96NT5 459 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 TGM7Q96PF1 710 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 TSSK1BQ9BXA7 367 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 EPB41L1Q9H4G0 881 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 KIR3DX1Q9H7L2 352 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 ASCL3Q9NQ33 180 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 PDP2Q9P2J9 529 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 GALPQ9UBC7 116 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 PISDQ9UG56 409 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 RAXQ9Y2V3 346 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 PCDHGA8Q9Y5G5 932 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 HEBP2Q9Y5Z4 205 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 MRFAP1Q9Y605 127 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 TEX264Q9Y6I9 313 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 COLEC10Q9Y6Z7 277 aa14.83□□□□□ -0.04
LIG1-219ENST00000600055 UNC13CQ8NB66 2214 aa14.82□□□□□ -0.04
LIG1-219ENST00000600055 CAPN5O15484 640 aaPredicted RBP14.82□□□□□ -0.04
LIG1-219ENST00000600055 GPC4O75487 556 aa14.82□□□□□ -0.04
LIG1-219ENST00000600055 TTC4O95801 387 aa14.82□□□□□ -0.04
LIG1-219ENST00000600055 CCL4P13236 92 aa14.82□□□□□ -0.04
LIG1-219ENST00000600055 DEKP35659 375 aaKnown RBP14.82□□□□□ -0.04
LIG1-219ENST00000600055 CAPZBP47756 277 aa14.82□□□□□ -0.04
LIG1-219ENST00000600055 SLC7A5Q01650 507 aa14.82□□□□□ -0.04
LIG1-219ENST00000600055 PDIA2Q13087 525 aaKnown RBP14.82□□□□□ -0.04
LIG1-219ENST00000600055 PRKG2Q13237 762 aa14.82□□□□□ -0.04
LIG1-219ENST00000600055 EIF3IQ13347 325 aaKnown RBP14.82□□□□□ -0.04
LIG1-219ENST00000600055 TRA2AQ13595 282 aaKnown RBP eCLIP14.82□□□□□ -0.045e-6■□□□□ 11.3
LIG1-219ENST00000600055 SPANXN3Q5MJ09 141 aa14.82□□□□□ -0.04
LIG1-219ENST00000600055 UNC5AQ6ZN44 842 aa14.82□□□□□ -0.04
LIG1-219ENST00000600055 ARHGAP22Q7Z5H3 698 aa14.82□□□□□ -0.04
LIG1-219ENST00000600055 PLXDC1Q8IUK5 500 aa14.82□□□□□ -0.04
LIG1-219ENST00000600055 BBOF1Q8ND07 529 aa14.82□□□□□ -0.04
LIG1-219ENST00000600055 OR5AR1Q8NGP9 310 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms