RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 CBX3Q13185 183 aa20.18■□□□□ 0.82
UPF1-207ENST00000599848 OR4C6Q8NH72 309 aa20.18■□□□□ 0.82
UPF1-207ENST00000599848 CDCA3Q99618 268 aaPredicted RBP20.18■□□□□ 0.82
UPF1-207ENST00000599848 IFT80Q9P2H3 777 aaPredicted RBP20.18■□□□□ 0.82
UPF1-207ENST00000599848 ELOA3DA6NLF2 546 aaPredicted RBP20.17■□□□□ 0.82
UPF1-207ENST00000599848 TGFB1I1O43294 461 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 CORO7P57737 925 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 ELOA3BQ3SY89 546 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 PAOXQ6QHF9 649 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 ELOA3Q8NG57 546 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 JOSD2Q8TAC2 188 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 IPCEF1Q8WWN9 437 aaPredicted RBP20.17■□□□□ 0.82
UPF1-207ENST00000599848 FBXL18Q96ME1 805 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 CPXM1Q96SM3 734 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 GPN1Q9HCN4 374 aaPredicted RBP20.17■□□□□ 0.82
UPF1-207ENST00000599848 IL23AQ9NPF7 189 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 CD84Q9UIB8 345 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 CBSLP0DN79 551 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 CBSP35520 551 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 PRSS58Q8IYP2 241 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 MAPK15Q8TD08 544 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 SMPDL3BQ92485 455 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 RGMAQ96B86 450 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 ATG10Q9H0Y0 220 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 PCDHGC4Q9Y5F7 938 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 PCDHGA2Q9Y5H1 932 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 UPK3BL1B0FP48 263 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 UPK3BL2E5RIL1 263 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 TP53I11O14683 189 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 SCELO95171 688 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 CXCR1P25024 350 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 PGDP52209 483 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 QSOX2Q6ZRP7 698 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 HPS6Q86YV9 775 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 MMAAQ8IVH4 418 aaKnown RBP20.17■□□□□ 0.82
UPF1-207ENST00000599848 OR2AP1Q8NGE2 309 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 ZSWIM3Q96MP5 696 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 TAS2R14Q9NYV8 317 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 DAPK2Q9UIK4 370 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 GSC2O15499 205 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 SNX4O95219 450 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 PRAMEF12O95522 483 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 ADGRD2Q7Z7M1 963 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 CMTR2Q8IYT2 770 aaKnown RBP20.17■□□□□ 0.82
UPF1-207ENST00000599848 GPR151Q8TDV0 419 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 ANKRD7Q92527 254 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 COQ7Q99807 217 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 P2RY13Q9BPV8 354 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 ANKZF1Q9H8Y5 726 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 TSC22D2O75157 780 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 ACP5P13686 325 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 POLR2JP52435 117 aaKnown RBP20.17■□□□□ 0.82
UPF1-207ENST00000599848 RBBP4Q09028 425 aa20.17■□□□□ 0.82
UPF1-207ENST00000599848 MRPL49Q13405 166 aaKnown RBP20.17■□□□□ 0.82
UPF1-207ENST00000599848 A0A0X1KG70 313 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 SYNGR4O95473 234 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 MAGEA11P43364 429 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 BPIFB6Q8NFQ5 453 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 FUT8Q9BYC5 575 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 TTYH3Q9C0H2 523 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 PDE7BQ9NP56 450 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 AP3S2P59780 193 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 SNAPC1Q16533 368 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 SLC30A6Q6NXT4 461 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 DUS1LQ6P1R4 473 aaKnown RBP20.16■□□□□ 0.82
UPF1-207ENST00000599848 CLVS1Q8IUQ0 354 aaPredicted RBP20.16■□□□□ 0.82
UPF1-207ENST00000599848 RNF148Q8N7C7 305 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 TBATAQ96M53 351 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 B3GNT5Q9BYG0 378 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 SP140LQ9H930 580 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 GKN1Q9NS71 199 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 C14orf105Q9NVL8 296 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 OSER1Q9NX31 292 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 ADGRB1O14514 1584 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 LOC100506127A0A0U1RQW1 187 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 KLRC4O43908 158 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 ALPPP05187 535 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 ALDH3A2P51648 485 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 RIPK1Q13546 671 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 POF1BQ8WVV4 589 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 CHCHD6Q9BRQ6 235 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 MAN2B2Q9Y2E5 1009 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 TMX2-CTNND1H3BSU7 103 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 IL7RP16871 459 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 HRH2P25021 359 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 BST1Q10588 318 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 TIGD2Q4W5G0 525 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 SCIMPQ6UWF3 145 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 VANGL1Q8TAA9 524 aaPredicted RBP20.16■□□□□ 0.82
UPF1-207ENST00000599848 LRIG1Q96JA1 1093 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 SLC24A3Q9HC58 644 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 PNO1Q9NRX1 252 aaKnown RBP20.16■□□□□ 0.82
UPF1-207ENST00000599848 PCDHGB2Q9Y5G2 931 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 INSL5Q9Y5Q6 135 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 KIF20BQ96Q89 1820 aa20.16■□□□□ 0.82
UPF1-207ENST00000599848 GPR17Q13304 367 aa20.15■□□□□ 0.82
UPF1-207ENST00000599848 KIAA0930Q6ICG6 404 aaPredicted RBP20.15■□□□□ 0.82
UPF1-207ENST00000599848 SLC8B1Q6J4K2 584 aa20.15■□□□□ 0.82
UPF1-207ENST00000599848 CRYBG2Q8N1P7 616 aa20.15■□□□□ 0.82
UPF1-207ENST00000599848 ZNF461Q8TAF7 563 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms