RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 D2HGDHQ8N465 521 aa9.55□□□□□ -0.88
VRK3-216ENST00000599342 LRRC57Q8N9N7 239 aa9.55□□□□□ -0.88
VRK3-216ENST00000599342 ACVR1CQ8NER5 493 aa9.55□□□□□ -0.88
VRK3-216ENST00000599342 OR4E2Q8NGC2 313 aa9.55□□□□□ -0.88
VRK3-216ENST00000599342 OR8K5Q8NH50 307 aa9.55□□□□□ -0.88
VRK3-216ENST00000599342 CT55Q8WUE5 264 aa9.55□□□□□ -0.88
VRK3-216ENST00000599342 LCN9Q8WX39 176 aa9.55□□□□□ -0.88
VRK3-216ENST00000599342 ALG3Q92685 438 aa9.55□□□□□ -0.88
VRK3-216ENST00000599342 DNAJC1Q96KC8 554 aaKnown RBP9.55□□□□□ -0.88
VRK3-216ENST00000599342 RMDN2Q96LZ7 410 aa9.55□□□□□ -0.88
VRK3-216ENST00000599342 ALS2CR12Q96Q35 445 aa9.55□□□□□ -0.88
VRK3-216ENST00000599342 LACRTQ9GZZ8 138 aa9.55□□□□□ -0.88
VRK3-216ENST00000599342 EPN3Q9H201 632 aa9.55□□□□□ -0.88
VRK3-216ENST00000599342 FAM96AQ9H5X1 160 aa9.55□□□□□ -0.88
VRK3-216ENST00000599342 LRRC40Q9H9A6 602 aa9.55□□□□□ -0.88
VRK3-216ENST00000599342 COG4Q9H9E3 785 aa9.55□□□□□ -0.88
VRK3-216ENST00000599342 ARNT2Q9HBZ2 717 aa9.55□□□□□ -0.88
VRK3-216ENST00000599342 ZDHHC3Q9NYG2 299 aa9.55□□□□□ -0.88
VRK3-216ENST00000599342 MAN2B2Q9Y2E5 1009 aa9.55□□□□□ -0.88
VRK3-216ENST00000599342 REXO2Q9Y3B8 237 aaKnown RBP9.55□□□□□ -0.88
VRK3-216ENST00000599342 PCDHGA6Q9Y5G7 932 aa9.55□□□□□ -0.88
VRK3-216ENST00000599342 KCNMB2Q9Y691 235 aa9.55□□□□□ -0.88
VRK3-216ENST00000599342 BSNQ9UPA5 3926 aa9.55□□□□□ -0.88
VRK3-216ENST00000599342 CCL22O00626 93 aa9.54□□□□□ -0.88
VRK3-216ENST00000599342 LDB2O43679 373 aa9.54□□□□□ -0.88
VRK3-216ENST00000599342 SGTAO43765 313 aa9.54□□□□□ -0.88
VRK3-216ENST00000599342 RFPL1O75677 317 aa9.54□□□□□ -0.88
VRK3-216ENST00000599342 SCRG1O75711 98 aa9.54□□□□□ -0.88
VRK3-216ENST00000599342 POLR2CP19387 275 aaPredicted RBP9.54□□□□□ -0.88
VRK3-216ENST00000599342 ACRV1P26436 265 aa9.54□□□□□ -0.88
VRK3-216ENST00000599342 CASRP41180 1078 aa9.54□□□□□ -0.88
VRK3-216ENST00000599342 ARCN1P48444 511 aaKnown RBP9.54□□□□□ -0.88
VRK3-216ENST00000599342 KPNA2P52292 529 aaKnown RBP9.54□□□□□ -0.88
VRK3-216ENST00000599342 RPS15P62841 145 aaKnown RBP9.54□□□□□ -0.88
VRK3-216ENST00000599342 KIF5AQ12840 1032 aa9.54□□□□□ -0.88
VRK3-216ENST00000599342 MSLNQ13421 630 aaPredicted RBP9.54□□□□□ -0.88
VRK3-216ENST00000599342 POU6F1Q14863 301 aa9.54□□□□□ -0.88
VRK3-216ENST00000599342 GPR19Q15760 415 aa9.54□□□□□ -0.88
VRK3-216ENST00000599342 DENND5AQ6IQ26 1287 aa9.54□□□□□ -0.88
VRK3-216ENST00000599342 CERS6Q6ZMG9 384 aa9.54□□□□□ -0.88
VRK3-216ENST00000599342 TAS2R42Q7RTR8 314 aa9.54□□□□□ -0.88
VRK3-216ENST00000599342 LILRA3Q8N6C8 439 aaPredicted RBP9.54□□□□□ -0.88
VRK3-216ENST00000599342 FAM71DQ8N9W8 422 aa9.54□□□□□ -0.88
VRK3-216ENST00000599342 STYXQ8WUJ0 223 aa9.54□□□□□ -0.88
VRK3-216ENST00000599342 FERD3LQ96RJ6 166 aa9.54□□□□□ -0.88
VRK3-216ENST00000599342 BAG1Q99933 345 aaPredicted RBP9.54□□□□□ -0.88
VRK3-216ENST00000599342 TLR10Q9BXR5 811 aa9.54□□□□□ -0.88
VRK3-216ENST00000599342 GPR87Q9BY21 358 aa9.54□□□□□ -0.88
VRK3-216ENST00000599342 SRMSQ9H3Y6 488 aa9.54□□□□□ -0.88
VRK3-216ENST00000599342 ACTL8Q9H568 366 aa9.54□□□□□ -0.88
VRK3-216ENST00000599342 KCND1Q9NSA2 647 aa9.54□□□□□ -0.88
VRK3-216ENST00000599342 NLE1Q9NVX2 485 aaPredicted RBP9.54□□□□□ -0.88
VRK3-216ENST00000599342 POMT2Q9UKY4 750 aa9.54□□□□□ -0.88
VRK3-216ENST00000599342 PACSIN2Q9UNF0 486 aaPredicted RBP9.54□□□□□ -0.88
VRK3-216ENST00000599342 TP53TG5Q9Y2B4 290 aa9.54□□□□□ -0.88
VRK3-216ENST00000599342 IGLV3-16A0A075B6K0 115 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 H7C0S8 307 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 QSOX1O00391 747 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 PSMD3O43242 534 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 AP2A1O95782 977 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 FTCDO95954 541 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 RECKO95980 971 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 GAS8O95995 478 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 KLK3P07288 261 aaPredicted RBP9.53□□□□□ -0.88
VRK3-216ENST00000599342 GSTM1P09488 218 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 FURINP09958 794 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 TPH1P17752 444 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 PTPN4P29074 926 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 CD151P48509 253 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 PMS2P54278 862 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 GSDMDP57764 484 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 GSTM4Q03013 218 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 CACNG1Q06432 222 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 KLRB1Q12918 225 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 RPA4Q13156 261 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 KCTD11Q693B1 232 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 TCTN3Q6NUS6 607 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 FAM199XQ6PEV8 388 aaPredicted RBP9.53□□□□□ -0.88
VRK3-216ENST00000599342 SYVN1Q86TM6 617 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 TMEM135Q86UB9 458 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 HOOK3Q86VS8 718 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 SERPINA9Q86WD7 417 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 KLHDC8BQ8IXV7 354 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 TEX19Q8NA77 164 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 THAP4Q8WY91 577 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 CPT1BQ92523 772 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 MR1Q95460 341 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.53□□□□□ -0.88
VRK3-216ENST00000599342 ZNF501Q96CX3 271 aaPredicted RBP9.53□□□□□ -0.88
VRK3-216ENST00000599342 TMEM121Q9BTD3 319 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 HGH1Q9BTY7 390 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 SLC7A5P2Q9GIP4 190 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 RBSNQ9H1K0 784 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 OR52A5Q9H2C5 316 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 MVB12BQ9H7P6 319 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 SYTL2Q9HCH5 934 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 LATS2Q9NRM7 1088 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 C1GALT1Q9NS00 363 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 SMARCAL1Q9NZC9 954 aa9.53□□□□□ -0.88
VRK3-216ENST00000599342 BTRCQ9Y297 605 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms