RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	10.25	□□□□□ -0.77
LSM4-205	ENST00000597776	PCDHA13	Q9Y5I0	950 aa		10.25	□□□□□ -0.77
LSM4-205	ENST00000597776	TNRC6A	Q8NDV7	1962 aa	Known RBP	10.25	□□□□□ -0.77
LSM4-205	ENST00000597776	CCDC66	A2RUB6	948 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	GSAP	A4D1B5	854 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	C5orf60	A6NFR6	353 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	KCNN4	O15554	427 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	PJA2	O43164	708 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	PRSS56	P0CW18	603 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	CDH3	P22223	829 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	PTGIR	P43119	386 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	UQCRFS1	P47985	274 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	CD97	P48960	835 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	PRLHR	P49683	370 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	CDKN1C	P49918	316 aa	Predicted RBP	10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	CCL11	P51671	97 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	PGD	P52209	483 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	EIF3E	P60228	445 aa	Known RBP	10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	MSLN	Q13421	630 aa	Predicted RBP	10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	NADK2	Q4G0N4	442 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	ANKRD20A2	Q5SQ80	823 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	PLEKHS1	Q5SXH7	462 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	TMTC4	Q5T4D3	741 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	ANKRD20A1	Q5TYW2	823 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	ANKRD20A3	Q5VUR7	823 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	DENND5A	Q6IQ26	1287 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	AADACL2	Q6P093	401 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	ATCAY	Q86WG3	371 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	CDKL3	Q8IVW4	592 aa	Predicted RBP	10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	NXPE1	Q8N323	547 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	FAM26E	Q8N5C1	309 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	OR8K5	Q8NH50	307 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	HM13	Q8TCT9	377 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	ZFPM2	Q8WW38	1151 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	THAP4	Q8WY91	577 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	SLC25A23	Q9BV35	468 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	KLHL25	Q9H0H3	589 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	SRMS	Q9H3Y6	488 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	FARSA	Q9Y285	508 aa	Known RBP	10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	BTRC	Q9Y297	605 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	COLEC10	Q9Y6Z7	277 aa		10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	USP9X	Q93008	2570 aa	Predicted RBP	10.24	□□□□□ -0.77
LSM4-205	ENST00000597776	BLACE	A4D250	179 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	KLHL33	A6NCF5	533 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	RCCD1	A6NED2	376 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	TTLL8	A6PVC2	850 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	AGAP14	A8MT82	685 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	TMEM150C	B9EJG8	249 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	MEN1	O00255	615 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	BTN3A3	O00478	584 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	BTN3A1	O00481	513 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	CRTAM	O95727	393 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	RBP3	P10745	1247 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	RALB	P11234	206 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	GP1BB	P13224	206 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	ATP1B2	P14415	290 aa	Predicted RBP	10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	PVR	P15151	417 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	ST6GAL1	P15907	406 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	ITGAL	P20701	1170 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	PTMS	P20962	102 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	CTNNA2	P26232	953 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	NDUFS1	P28331	727 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	PDHA2	P29803	388 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	CTNNA1	P35221	906 aa	Known RBP	10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	PREP	P48147	710 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	LMAN1	P49257	510 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	COPS2	P61201	443 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	PRKAA1	Q13131	559 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	PRPSAP1	Q14558	356 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	SPA17	Q15506	151 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	PTCHD3	Q3KNS1	767 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	ZNF789	Q5FWF6	425 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	IZUMO3	Q5VZ72	239 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	DARS2	Q6PI48	645 aa	Known RBP	10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	ZNF517	Q6ZMY9	492 aa	Predicted RBP	10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	DSEL	Q8IZU8	1212 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	CARF	Q8N187	725 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	ENDOV	Q8N8Q3	282 aa	Known RBP	10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	PHC3	Q8NDX5	983 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	ACVR1C	Q8NER5	493 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	OR1L3	Q8NH93	324 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	LCN9	Q8WX39	176 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	SEC14L1	Q92503	715 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	ULK4	Q96C45	1275 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	CLIP3	Q96DZ5	547 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	DNAJC1	Q96KC8	554 aa	Known RBP	10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	SPATA13	Q96N96	652 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	FERD3L	Q96RJ6	166 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	COPS8	Q99627	209 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	TBL1Y	Q9BQ87	522 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	CCM2	Q9BSQ5	444 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	HGH1	Q9BTY7	390 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	OSBPL8	Q9BZF1	889 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	ING2	Q9H160	280 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	OR52A5	Q9H2C5	316 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	XKR8	Q9H6D3	395 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	COG4	Q9H9E3	785 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	ACSS2	Q9NR19	701 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	LATS2	Q9NRM7	1088 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	AAR2	Q9Y312	384 aa	Known RBP	10.23	□□□□□ -0.77

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