RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 MPOP05164 745 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 THRAP10827 490 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 HOXB3P14651 431 aaPredicted RBP11.62□□□□□ -0.55
LIG3-213ENST00000590630 MAPK9P45984 424 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 CAPZBP47756 277 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 PREPP48147 710 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 ARL4CP56559 192 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 CFHR1Q03591 330 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 CYP4F3Q08477 520 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 CALCOCO2Q13137 446 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 THOC5Q13769 683 aaKnown RBP11.62□□□□□ -0.55
LIG3-213ENST00000590630 BOP1Q14137 746 aaKnown RBP11.62□□□□□ -0.55
LIG3-213ENST00000590630 CRYMQ14894 314 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 BBS9Q3SYG4 887 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 MSS51Q4VC12 460 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 ZNF470Q6ECI4 717 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 PTRHD1Q6GMV3 140 aaKnown RBP11.62□□□□□ -0.55
LIG3-213ENST00000590630 KLHL35Q6PF15 583 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 ZNF574Q6ZN55 896 aaPredicted RBP11.62□□□□□ -0.55
LIG3-213ENST00000590630 RAB11FIP2Q7L804 512 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 PDZD3Q86UT5 571 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 PLXDC1Q8IUK5 500 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 GABPB2Q8TAK5 448 aaPredicted RBP11.62□□□□□ -0.55
LIG3-213ENST00000590630 MDM1Q8TC05 714 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 ASZ1Q8WWH4 475 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 NCSTNQ92542 709 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 LPGAT1Q92604 370 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 CMKLR1Q99788 373 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 FAM167BQ9BTA0 163 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 RAB17Q9H0T7 212 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 KIR3DX1Q9H7L2 352 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 C20orf96Q9NUD7 363 aaPredicted RBP11.62□□□□□ -0.55
LIG3-213ENST00000590630 AKAP7Q9P0M2 348 aaPredicted RBP11.62□□□□□ -0.55
LIG3-213ENST00000590630 WHRNQ9P202 907 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 PDP2Q9P2J9 529 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 UTP11Q9Y3A2 253 aaKnown RBP11.62□□□□□ -0.55
LIG3-213ENST00000590630 CFAP20Q9Y6A4 193 aaKnown RBP11.62□□□□□ -0.55
LIG3-213ENST00000590630 FAM169AQ9Y6X4 670 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 ZFHX4Q86UP3 3567 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 MN1Q10571 1320 aaPredicted RBP11.61□□□□□ -0.55
LIG3-213ENST00000590630 KMT2BQ9UMN6 2715 aaPredicted RBP11.61□□□□□ -0.55
LIG3-213ENST00000590630 PKD1L2Q7Z442 2459 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 PRAMEF33A0A0G2JMD5 474 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 A0A1W2PNU3 283 aaPredicted RBP11.61□□□□□ -0.55
LIG3-213ENST00000590630 SLC5A10A0PJK1 596 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 KPNA5O15131 536 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 BRINP1O60477 761 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 BANF1O75531 89 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 APOA4P06727 396 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 AMD1P17707 334 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 PDHA2P29803 388 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 CCR7P32248 378 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 EIF3BP55884 814 aaKnown RBP11.61□□□□□ -0.55
LIG3-213ENST00000590630 CBLBQ13191 982 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 KRT33BQ14525 404 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 PLCL1Q15111 1095 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 TMED2Q15363 201 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 SPANXN3Q5MJ09 141 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 DUPD1Q68J44 220 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 CENPUQ71F23 418 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 PROSER1Q86XN7 944 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 FBXO39Q8N4B4 442 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 ACVR1CQ8NER5 493 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 KIF18AQ8NI77 898 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 CCDC74BQ96LY2 380 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 BIRC8Q96P09 236 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 RAB33BQ9H082 229 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 MVB12BQ9H7P6 319 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 IL1RAPL1Q9NZN1 696 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 OGFRQ9NZT2 677 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 SLC24A2Q9UI40 661 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 SNX24Q9Y343 169 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 MRFAP1Q9Y605 127 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 TEX264Q9Y6I9 313 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 AHCTF1Q8WYP5 2266 aa11.61□□□□□ -0.55
LIG3-213ENST00000590630 IQCF5A8MTL0 148 aa11.6□□□□□ -0.55
LIG3-213ENST00000590630 BHMG1C9JSJ3 638 aaPredicted RBP11.6□□□□□ -0.55
LIG3-213ENST00000590630 E7ESA3 106 aa11.6□□□□□ -0.55
LIG3-213ENST00000590630 TOX3O15405 576 aaPredicted RBP11.6□□□□□ -0.55
LIG3-213ENST00000590630 GPC4O75487 556 aa11.6□□□□□ -0.55
LIG3-213ENST00000590630 SLCO2B1O94956 709 aa11.6□□□□□ -0.55
LIG3-213ENST00000590630 S1PR4O95977 384 aa11.6□□□□□ -0.55
LIG3-213ENST00000590630 C9P02748 559 aa11.6□□□□□ -0.55
LIG3-213ENST00000590630 ITGA2BP08514 1039 aa11.6□□□□□ -0.55
LIG3-213ENST00000590630 JMJD7P0C870 316 aa11.6□□□□□ -0.55
LIG3-213ENST00000590630 TYRP1P17643 537 aa11.6□□□□□ -0.55
LIG3-213ENST00000590630 AOAHP28039 575 aa11.6□□□□□ -0.55
LIG3-213ENST00000590630 ACADLP28330 430 aa11.6□□□□□ -0.55
LIG3-213ENST00000590630 RBMS1P29558 406 aaKnown RBP11.6□□□□□ -0.55
LIG3-213ENST00000590630 ELK3P41970 407 aa11.6□□□□□ -0.55
LIG3-213ENST00000590630 SLC1A2P43004 574 aa11.6□□□□□ -0.55
LIG3-213ENST00000590630 ERVPABLB-1P60509 514 aa11.6□□□□□ -0.55
LIG3-213ENST00000590630 MRPS25P82663 173 aaKnown RBP11.6□□□□□ -0.55
LIG3-213ENST00000590630 HSPA14Q0VDF9 509 aa11.6□□□□□ -0.55
LIG3-213ENST00000590630 C16orf72Q14CZ0 275 aa11.6□□□□□ -0.55
LIG3-213ENST00000590630 BRD3Q15059 726 aa11.6□□□□□ -0.55
LIG3-213ENST00000590630 TBC1D25Q3MII6 688 aa11.6□□□□□ -0.55
LIG3-213ENST00000590630 DUS1LQ6P1R4 473 aaKnown RBP11.6□□□□□ -0.55
LIG3-213ENST00000590630 OTOAQ7RTW8 1153 aa11.6□□□□□ -0.55
LIG3-213ENST00000590630 KCNMB4Q86W47 210 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms